Browse Element(s) Details


OsAffx.28769.3.S1_at

Description tigr:9629.m06986
TID=OsAffx.28769.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g707007/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28769.3.S1_at--872--1431NONE
AGAACTCCCATCCAGATTATGCGCA
NONE
OsAffx.28769.3.S1_at--649--5471NONE
GAACTCCCATCCAGATTATGCGCAG
NONE
OsAffx.28769.3.S1_at--1121--1991NONE
ACTCCCATCCAGATTATGCGCAGCT
NONE
OsAffx.28769.3.S1_at--163--9331NONE
TCCCATCCAGATTATGCGCAGCTAT
NONE
OsAffx.28769.3.S1_at--825--4331Chr01:41256015..41256034 (20 bp)
CCATCCAGATTATGCGCAGCTATCA
LOC_Os01g70700
OsAffx.28769.3.S1_at--579--611Chr01:41256021..41256045 (25 bp)
ATGCGCAGCTATCAAGGATGTTGAT
LOC_Os01g70700
OsAffx.28769.3.S1_at--723--991Chr01:41256035..41256059 (25 bp)
AGGATGTTGATTCTAGTTGCTGTGA
LOC_Os01g70700
OsAffx.28769.3.S1_at--529--731Chr01:41256038..41256062 (25 bp)
ATGTTGATTCTAGTTGCTGTGAGGC
LOC_Os01g70700
OsAffx.28769.3.S1_at--576--6651Chr01:41256040..41256064 (25 bp)
GTTGATTCTAGTTGCTGTGAGGCGA
LOC_Os01g70700
OsAffx.28769.3.S1_at--292--10791Chr01:41256041..41256065 (25 bp)
TTGATTCTAGTTGCTGTGAGGCGAG
LOC_Os01g70700
OsAffx.28769.3.S1_at--897--3691Chr01:41256047..41256071 (25 bp)
CTAGTTGCTGTGAGGCGAGGAGGTC
LOC_Os01g70700
Target Sequence 
AGAACTCCCATCCAGATTATGCGCAGCTATCAAGGATGTTGATTCTAGTTGCTGTGAGGCGAGGAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28769.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis