Browse Element(s) Details


OsAffx.2336.1.S1_at

Description gb:NM_191281.1
DB_XREF= gi:34909645
GEN=P0503C12.23
TID=OsAffx.2336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative beta-amylase (P0503C12.23), mRNA.
PROD=putative beta-amylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g707002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2336.1.S1_at--383--9452Chr01:32051581..32051605 (25 bp)
TCTGGCCTGATTGTGGACATAAGAG
NONE
OsAffx.2336.1.S1_at--588--2791Chr01:32051601..32051624 (24 bp)
AAGAGGTTGGGCTTGGCCCTGCAAA
NONE
OsAffx.2336.1.S1_at--301--8451Chr01:32051614..32051667 (25 bp)
TGGCCCTGCAAAGCCAAGGTTGGGA
NONE
OsAffx.2336.1.S1_at--577--7611Chr01:32051664..32051688 (25 bp)
GGGAATTCCCTGACATCGGACAAAT
NONE
OsAffx.2336.1.S1_at--844--1811Chr01:32051730..32051754 (25 bp)
CACCCGAAGTGGGAGCTACCGGACG
NONE
OsAffx.2336.1.S1_at--911--8012Chr01:41254345..41254369 (25 bp)
GGAGGACACGTTTTTCTTCACCGCG
LOC_Os01g70700
OsAffx.2336.1.S1_at--649--5751Chr01:32051895..32051919 (25 bp)
GACGAGATGAACATGGGCCCCGCCG
NONE
OsAffx.2336.1.S1_at--680--4171Chr01:32052013..32052037 (25 bp)
CGCCAACCTGCGCAGAGAAGTGAGC
NONE
OsAffx.2336.1.S1_at--418--8071Chr01:32052052..32052076 (25 bp)
GGAGCAAGATCAGGCCGACTACTGA
NONE
OsAffx.2336.1.S1_at--776--9911Chr01:32052071..32052095 (25 bp)
TACTGAGTCGGCAGCCAGCATTGTA
NONE
OsAffx.2336.1.S1_at--303--31Chr01:32052090..32052114 (25 bp)
ATTGTACGCCCGTGGAGCCGTGATC
NONE
Target Sequence 
TCTGGCCTGATTGTGGACATAAGAGGTTGGGCTTGGCCCTGCAAAGCCAAGGTTGGGAATTCCCTGACATCGGACAAATA
CCTCGAGGAGAACTTCAGAGTGGCGGCGACAGAAGCCGGGCACCCGAAGTGGGAGCTACCGGACGCCGCCGCCGGAGAGT
ACAACGACACGCCGGAGGACACGTTTTTCTTCACCGCGGACGGCGGCACGTACCTCACCGAGGCGGGGAGGTTCTTCCTC
ACGTGGTACTCCAACAAGCTGGTCGAGCACGGCGACAAGATCCTCGACGAGATGAACATGGGCCCCGCCGGCCTCCTCAC
TCCGCGTGGCCTTCTCTCCACCCGCCAACCTGCGCAGAGAAGTGAGCGAGAGAGAGAGAGAGGAGCAAGATCAGGCCGAC
TACTGAGTCGGCAGCCAGCATTGTACGCCCGTGGAGCCGTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis