Browse Element(s) Details


OsAffx.28769.1.S1_s_at

Description gb:NM_190035.1
DB_XREF= gi:34907153
GEN=P0506E04.28
TID=OsAffx.28769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0506E04.28 (P0506E04.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7070011/11hypothetical protein
LOC_Os07g358802/11Beta-amylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28769.1.S1_s_at--115--7111Chr01:41253663..41253687 (25 bp)
GTCACCGCGGCGAACGAGCTGGAGG
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--720--3931Chr01:41253708..41253732 (25 bp)
CGGCTGCGGCGGATGTGGTGGGACG
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--242--7591Chr01:41253767..41253791 (25 bp)
GGGCATCGTCGAGGGCACCGGGCCG
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--580--8472Chr07:21469976..21470088 (25 bp)
TGGCGCGCGTACAGGGAGCCATCCC
LOC_Os07g35880
OsAffx.28769.1.S1_s_at--890--4552Chr07:21469980..21470092 (25 bp)
GCGCGTACAGGGAGCCATCCCGCTG
LOC_Os07g35880
OsAffx.28769.1.S1_s_at--145--5432Chr01:41253901..41253925 (25 bp)
GAACCAGGAGTACCTCACCATCGGC
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--331--9671Chr01:41253915..41253939 (25 bp)
TCACCATCGGCGTTGACGACCGGCT
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--525--491Chr01:41253920..41253944 (25 bp)
ATCGGCGTTGACGACCGGCTTCTGT
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--1119--10731Chr01:41253927..41253951 (25 bp)
TTGACGACCGGCTTCTGTTCCATGG
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--797--4071Chr01:41253931..41253955 (25 bp)
CGACCGGCTTCTGTTCCATGGCAGA
LOC_Os01g70700
OsAffx.28769.1.S1_s_at--353--6691Chr01:41253943..41253967 (25 bp)
GTTCCATGGCAGAACTCCCATCCAG
LOC_Os01g70700
Target Sequence 
GTCACCGCGGCGAACGAGCTGGAGGACGCGGCGGGGCTGAGGGCGCGGCTGCGGCGGATGTGGTGGGACGCCGGCGTCGA
CGGCGTCATGGCGGACGTGTGGTGGGGCATCGTCGAGGGCACCGGGCCGGCGCGGTACGAGTGGCGCGCGTACAGGGAGC
CATCCCGCTGCCGCGCTGAGTCCGCGACGTCGGCGACGATGACCCCGACCCCCGGTGGCGCGACGAACCAGGAGTACCTC
ACCATCGGCGTTGACGACCGGCTTCTGTTCCATGGCAGAACTCCCATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28769.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis