Browse Element(s) Details


Os.51558.1.S1_x_at

Description gb:AK063065.1
DB_XREF= gi:32973083
TID=Os.51558.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G04, full insert sequence.
FL= gb:AK063065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5984011/11Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g705201/11Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g598191/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51558.1.S1_x_at--918--6672Chr01:41172860..41172879 (20 bp)
GTTGCTCTGATCCTTTTGGAGTGAC
LOC_Os01g70520
Os.51558.1.S1_x_at--861--7471Chr01:34935605..34935629 (25 bp)
GTGTGGAACCATATGTAGCAGCTCA
LOC_Os01g59840
Os.51558.1.S1_x_at--1048--6491Chr01:34934874..34934898 (25 bp)
GTATAAACGTTCTTTCCTTGTGGAG
LOC_Os01g59840
Os.51558.1.S1_x_at--299--6252Chr01:34934552..34934573 (22 bp)
GATGGATACTGCACCCATTGGTATT
LOC_Os01g59840
Os.51558.1.S1_x_at--735--2351Chr01:34934502..34934526 (25 bp)
AAAGCTATCGGTTCTCGTCTTCCAT
LOC_Os01g59840
Os.51558.1.S1_x_at--169--7051Chr01:34934424..34934448 (25 bp)
GTAAATCACTACTTTTCTCTCTATG
LOC_Os01g59840
Os.51558.1.S1_x_at--257--791Chr01:34934402..34934426 (25 bp)
ATGTGAGCGATCTCCCTTTGGCAAA
LOC_Os01g59840
Os.51558.1.S1_x_at--85--8051Chr01:34934376..34934400 (25 bp)
GGAGTTCGAGACTTCATTGCTGATC
LOC_Os01g59840
Os.51558.1.S1_x_at--789--5031Chr01:34934339..34934363 (25 bp)
GCAGAGGTTGGCCAGTTTTCTATTT
LOC_Os01g59840
Os.51558.1.S1_x_at--254--6131Chr01:34934287..34934311 (25 bp)
GAGTGTGTAGCTTGATTCCTTTATA
LOC_Os01g59840
Os.51558.1.S1_x_at--528--9251Chr01:34934271..34934295 (25 bp)
TCCTTTATAGGGACGGCCCATGAAG
LOC_Os01g59840
Target Sequence 
GTTGCTCTGATCCTTTTGGAGTGACCAAATGTACAGTGGGGAATTCCAGTGTGGAACCATATGTAGCAGCTCACAATATG
ATACTAACACATGCAGCTGTTGTTAGACTGTACAGAGAAAAATATCAAACTCTGCAAAAGGGGATTGTTGGTATAAACGT
TCTTTCCTTGTGGAGTTATCCATTAACAGACTCCACTGCGGATCTGCAAGCAGCTCAAAGATACAAGGATTTCACGTACG
GATGGATACTGCACCCATTGGTATTTGGAGATTACCCACAAGTAATGAAGAAAGCTATCGGTTCTCGTCTTCCATCCTTC
AGCAAAGTCCAAACTGAACTAGTCAAGGGTACTCTAGATTTCATTGGAGTAAATCACTACTTTTCTCTCTATGTGAGCGA
TCTCCCTTTGGCAAAAGGAGTTCGAGACTTCATTGCTGATCGATCAGTAAGCTGCAGAGGTTGGCCAGTTTTCTATTTAA
TTATGCACATAAATTTGTAGCCTAGGAGTGTGTAGCTTGATTCCTTTATAGGGACGGCCCATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51558.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis