Browse Element(s) Details


Os.13246.1.S1_at

Description gb:AK061173.1
DB_XREF= gi:32971191
TID=Os.13246.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0432B10.23 (P0432B10.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B11, full insert sequence.
FL= gb:AK059376.1 gb:AK061173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5987011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13246.1.S1_at--1028--9411Chr01:34954413..34954437 (25 bp)
TCGGGCCATCTACTGAACCACAAAT
LOC_Os01g59870
Os.13246.1.S1_at--938--3291Chr01:34954433..34954898 (25 bp)
CAAATGCCTGAGAAATCGCCGTCGG
LOC_Os01g59870
Os.13246.1.S1_at--684--3351Chr01:34954971..34954995 (25 bp)
CAGCCGCCGGGATGGTTTAGAAAAT
LOC_Os01g59870
Os.13246.1.S1_at--200--2451Chr01:34954991..34955015 (25 bp)
AAAATGCCTGGATTTTCGGCCGATC
LOC_Os01g59870
Os.13246.1.S1_at--733--6411Chr01:34955016..34955040 (25 bp)
GATCTCAAGATTTAGCCCGACGATT
LOC_Os01g59870
Os.13246.1.S1_at--1078--5751Chr01:34955034..34955058 (25 bp)
GACGATTCTTGTTTATTCTTGCCAC
LOC_Os01g59870
Os.13246.1.S1_at--389--2591Chr01:34955110..34955134 (25 bp)
AACGATATTTTTCTGCTTTGCTTTA
LOC_Os01g59870
Os.13246.1.S1_at--571--2511Chr01:34955155..34955179 (25 bp)
AACTCTTCCTTGTCGTAAGTTGCTA
LOC_Os01g59870
Os.13246.1.S1_at--250--2411Chr01:34955349..34955373 (25 bp)
AAAAAGCATTGGATTCGCCGGTCGG
LOC_Os01g59870
Os.13246.1.S1_at--524--4491Chr01:34955400..34955424 (25 bp)
GCCGTAAGGCGCTGTAGGTTCATGA
LOC_Os01g59870
Os.13246.1.S1_at--102--3011Chr01:34955424..34955448 (25 bp)
AATGCTAAGATTCCGATCCCTTCAT
LOC_Os01g59870
Target Sequence 
TCGGGCCATCTACTGAACCACAAATGCCTGAGAAATCGCCGTCGGCCTCGCCGTCCGAGTCGAGTAACCATGCTCCCGGC
CGCTTCACCGCCCTCGCCGCGGTGGTCCTCGCCGTTGCAGCCGCCGGGATGGTTTAGAAAATGCCTGGATTTTCGGCCGA
TCGATCTCAAGATTTAGCCCGACGATTCTTGTTTATTCTTGCCACACATTTGGCTGTGTATTAATTTACAACACGTTACA
GTACGTATGCGCAATGAACGATATTTTTCTGCTTTGCTTTAAATTCTTATAATTAANNANNAACTCTTCCTTGTCGTAAG
TTGCTAGAGCATATGGTGAGACTATATGTACACACGTAGTGATATNTGGCCATCCGCAGTAGCTACTTGGGGCCTTCTGT
TAATTATTTTCAGTGTTTAAATGCTTGGTTTTTGGAGGCGAGGTGGAGAGGATTTTTGGAAAGATGTGAGCTGGAGATGA
TCAAAGTGTGGGGAAAAAAAGCATTGGATTCGCCGGTCGGCAATACACGGCGGCCGGCCCCGATCGGCCGTAAGGCGCTG
TAGGTTCATGAATGCTAAGATTCCGATCCCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis