Browse Element(s) Details


Os.13245.1.S1_x_at

Description gb:BI812728
DB_XREF= gi:16578633
DB_XREF=F011H06
CLONE=F011H06
TID=Os.13245.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.13245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0432B10.22 (P0432B10.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5986011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13245.1.S1_x_at--860--6131Chr01:34950192..34950216 (25 bp)
GAGGGACAGGCATAGGCTTCTCCAC
LOC_Os01g59860
Os.13245.1.S1_x_at--407--4911Chr01:34950207..34950231 (25 bp)
GCTTCTCCACACGTTCAAATTCATG
LOC_Os01g59860
Os.13245.1.S1_x_at--103--811Chr01:34950229..34950253 (25 bp)
ATGGTCCTTAACAATTTCTTCAGTG
LOC_Os01g59860
Os.13245.1.S1_x_at--14--6471Chr01:34950262..34950286 (25 bp)
GATAAGCCCTTGGAGTTTCCTAGTG
LOC_Os01g59860
Os.13245.1.S1_x_at--379--5571Chr01:34950402..34950426 (25 bp)
GAAAGACTCGAGCTCAATTGATGGA
LOC_Os01g59860
Os.13245.1.S1_x_at--810--8531Chr01:34950423..34950447 (25 bp)
TGGAGAATCAGACCTCGATGACGAC
LOC_Os01g59860
Os.13245.1.S1_x_at--923--5011Chr01:34950533..34950558 (25 bp)
GCAGGGCAGATGTAATACCCGTTTT
LOC_Os01g59860
Os.13245.1.S1_x_at--440--8191Chr01:34950572..34950596 (25 bp)
GGAAGTAAACGACTCCAGACGTCTA
LOC_Os01g59860
Os.13245.1.S1_x_at--749--9191Chr01:34950585..34950609 (25 bp)
TCCAGACGTCTACACCCAAAGGTAT
LOC_Os01g59860
Os.13245.1.S1_x_at--991--2831Chr01:34950648..34950672 (25 bp)
AAGTATCCAGCAGGGCACAGGCCAA
LOC_Os01g59860
Os.13245.1.S1_x_at--785--6511Chr01:34950707..34950731 (25 bp)
GATATTTATGTAGCTGCCTTTGAAA
LOC_Os01g59860
Target Sequence 
GAGGGACAGGCATAGGCTTCTCCACACGTTCAAATTCATGGTCCTTAACAATTTCTTCAGTGATTATCCTGATAAGCCCT
TGGAGTTTCCTAGTGTTAAAGTAAACCAGANCNANNTNGAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAAC
AGCGAGACGGCAAAGNGACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGAGAAT
CAGACCTCGATGACGACNATGATGATGAAGATGAAGAAGATGATGATGATGGCAATGGCCAGTGCTGAGAGCAGCGACAA
GGATGAGACGAGGACGTCGATGCAGGGCAGATGTAATACCCGTTTTTTTAAACATGATGGAAGTAAACGACTCCAGACGT
CTACACCCAAAGGTATACTCAACCAAAATGTAATGCACCTGAAGTCAGAGGTGCAAGTATCCAGCAGGGCACAGGCCAAC
TGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGCCTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13245.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis