Browse Element(s) Details


OsAffx.23861.1.S1_at

Description tigr:9629.m05882
TID=OsAffx.23861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5991011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23861.1.S1_at--174--10391Chr01:34972466..34972490 (25 bp)
TTTTGTCCAAAACCCTATCTTCTCG
LOC_Os01g59910
OsAffx.23861.1.S1_at--332--10591Chr01:34972447..34972471 (25 bp)
TTCTCGTGTGCCTTATTTGCTTGAT
LOC_Os01g59910
OsAffx.23861.1.S1_at--599--3891Chr01:34972362..34972386 (25 bp)
CTGTGCATTTGCGTAGTTCGTAGTT
LOC_Os01g59910
OsAffx.23861.1.S1_at--448--10551Chr01:34972280..34972304 (25 bp)
TTCATTCTGGCCTTTGCTTCAAACA
LOC_Os01g59910
OsAffx.23861.1.S1_at--654--6871Chr01:34972251..34972275 (25 bp)
GTATTGCTTTTGCAGCTTGTCCATT
LOC_Os01g59910
OsAffx.23861.1.S1_at--412--3891Chr01:34972196..34972220 (25 bp)
CTGGTCTGAGACCTCTACGGTAAAA
LOC_Os01g59910
OsAffx.23861.1.S1_at--640--5071Chr01:34972165..34972189 (25 bp)
GCAGCCCGTGTTGTGTTTTTAAACG
LOC_Os01g59910
OsAffx.23861.1.S1_at--914--5211Chr01:34972111..34972135 (25 bp)
GAATTAGTTGTTGCGGTTGGTCATA
LOC_Os01g59910
OsAffx.23861.1.S1_at--694--9691Chr01:34972048..34972072 (25 bp)
TCAAATCACTTGCACTGTCACATTC
LOC_Os01g59910
OsAffx.23861.1.S1_at--1111--8471Chr01:34971992..34972016 (25 bp)
TGGCTCCAATCTAGAGTCATCCAGG
LOC_Os01g59910
OsAffx.23861.1.S1_at--646--191Chr01:34971963..34971987 (25 bp)
ATTTCTTTGTGCTTCAACATGGCTG
LOC_Os01g59910
Target Sequence 
TTTTGTCCAAAACCCTATCTTCTCGTGTGCCTTATTTGCTTGATGCTAGAGTACAACTTAGAGAAAGTAGAATATGTAAT
ACACTATCCTAAAAAAACATATTTCTGTGCATTTGCGTAGTTCGTAGTTTGGTTCTATGTGAGCACATAAGAAGATCTAT
TTCTCTGTTTTATTTAGATAATGGAATTCATTCTGGCCTTTGCTTCAAACAAGATGTATTGCTTTTGCAGCTTGTCCATT
AATCTGTTGATTTTCTTGTTTATGCAAGAGCTGGTCTGAGACCTCTACGGTAAAAAAAAAAGCAGCCCGTGTTGTGTTTT
TAAACGGTAGTAGGTGAACCCTGTTTAGTTCATATGAATTAGTTGTTGCGGTTGGTCATATTAATCCAGTTCAAAGGCAT
TTCTGTCTGATTATAAATTCAAATCACTTGCACTGTCACATTCCAGAACATAGTAACTCACACACAAAACAACATGGCTC
CAATCTAGAGTCATCCAGGGAATATTTCTTTGTGCTTCAACATGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis