Browse Element(s) Details


Os.48290.1.A1_at

Description gb:CR280465
DB_XREF= gi:44667031
DB_XREF=CR280465
CLONE=y712g03p3
TID=Os.48290.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48290 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g599504/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48290.1.A1_at--756--411NONE
ATCTTCCGTTGCGTCCCTGCGGGTG
NONE
Os.48290.1.A1_at--38--5971Chr01:34991067..34991090 (24 bp)
GAGAAGGATCACATGGTTATTACTG
LOC_Os01g59950
Os.48290.1.A1_at--280--10411NONE
TTATTACTGAGTTTACCTGCTGTTC
NONE
Os.48290.1.A1_at--589--6071NONE
GAGTTTACCTGCTGTTCATTCGTAG
NONE
Os.48290.1.A1_at--926--4271NONE
CCTGCTGTTCATTCGTAGCGCTAAA
NONE
Os.48290.1.A1_at--1098--8711NONE
TGTTCATTCGTAGCGCTAAATTACT
NONE
Os.48290.1.A1_at--861--6951Chr01:34991022..34991046 (25 bp)
GTAGCGCTAAATTACTAATAAGCAG
LOC_Os01g59950
Os.48290.1.A1_at--761--6951Chr01:34990998..34991022 (25 bp)
GTAGCTAAAATATAAGATGCGATGC
LOC_Os01g59950
Os.48290.1.A1_at--122--2811NONE
AAGATGCGATGCTGCTTGGTAATCA
NONE
Os.48290.1.A1_at--318--6351NONE
GATGCTGCTTGGTAATCAGTACAGG
NONE
Os.48290.1.A1_at--932--251Chr01:34990891..34990915 (25 bp)
ATATGCGATGGAGTTCTGGATGCCT
LOC_Os01g59950
Target Sequence 
ATCTTCCGTTGCGTCCCTGCGGGTGCCCCAAGGGTCGCATGGAGTTCTGGGGCGCCAAGAAGGTGCGCCGGATCAAGAAA
TAGATAAGAGAAGGATCACATGGTTATTACTGAGTTTACCTGCTGTTCATTCGTAGCGCTAAATTACTAATAAGCAGTAG
CTAAAATATAAGATGCGATGCTGCTTGGTAATCAGTACAGGGAGAGGAAATAAAGGGATGATAGAAATACTGAAATAGGT
AATATCAGATCATAGATTATAGAATATGCGATGGAGTTCTGGATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48290.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis