Browse Element(s) Details


OsAffx.23862.1.S1_at

Description tigr:9629.m05885
TID=OsAffx.23862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5994011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23862.1.S1_at--870--4291Chr01:34986062..34986086 (25 bp)
GCGCGCAGGTGGAGGGTAGGCCCCG
LOC_Os01g59940
OsAffx.23862.1.S1_at--306--4291Chr01:34986020..34986044 (25 bp)
CCTCGGTCTCCGGTGAGAGGGCGAG
LOC_Os01g59940
OsAffx.23862.1.S1_at--982--4971Chr01:34985975..34985999 (25 bp)
GCATGGGCGAAAAAAGTCCGACACC
LOC_Os01g59940
OsAffx.23862.1.S1_at--503--5631Chr01:34985956..34985980 (25 bp)
GACACCGACGCATGCGGACGACGCA
LOC_Os01g59940
OsAffx.23862.1.S1_at--400--4091Chr01:34985938..34985962 (25 bp)
CGACGCACGGCAGGGCCGAGCGGAA
LOC_Os01g59940
OsAffx.23862.1.S1_at--296--1451Chr01:34985881..34985905 (25 bp)
AGAAGGTGGGCCTGGGAGCCAACGC
LOC_Os01g59940
OsAffx.23862.1.S1_at--149--5311Chr01:34985790..34985814 (25 bp)
GAAGGGGCCGGGACTGCCATTCACC
LOC_Os01g59940
OsAffx.23862.1.S1_at--603--4731Chr01:34985730..34985754 (25 bp)
GCTGTGCCCTCGCTGCCAGATGTCG
LOC_Os01g59940
OsAffx.23862.1.S1_at--480--9291Chr01:34985703..34985727 (25 bp)
TCCGCCAGTTCCCGGAGCCAAAGGG
LOC_Os01g59940
OsAffx.23862.1.S1_at--1083--5571Chr01:34985665..34985689 (25 bp)
GAAAGGAGAGCCCTGTTGCTACCAC
LOC_Os01g59940
OsAffx.23862.1.S1_at--465--8811Chr01:34985652..34985676 (25 bp)
TGTTGCTACCACTCCTCGTCGTTGT
LOC_Os01g59940
Target Sequence 
GCGCGCAGGTGGAGGGTAGGCCCCGGTTGGCGACGTCGTCCCCCTCGGTCTCCGGTGAGAGGGCGAGGGGCCATCCTCCT
GGAGGCGGCATGGGCGAAAAAAGTCCGACACCGACGCATGCGGACGACGCACGGCAGGGCCGAGCGGAAGGCGCGTGGTG
GGGCAGAGATGTTGACGACGGAGAAGGTGGGCCTGGGAGCCAACGCCCTCGCCATCGGGCCCTCGCCGCCGCGCCCTCGC
CGCCGGACACCGCCGTCGCTAGCGCCGGGGCGGAAGGGGCCGGGACTGCCATTCACCCGCCGCTCCCACCGCTGCCATGC
GACGCCCCCGCCGCTGTGCCCTCGCTGCCAGATGTCGCCTCCGCCAGTTCCCGGAGCCAAAGGGGCCAGGGTGGGGAGAA
AGGAGAGCCCTGTTGCTACCACTCCTCGTCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis