Browse Element(s) Details


OsAffx.23865.1.S1_at

Description tigr:9629.m05892
TID=OsAffx.23865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6001011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed
LOC_Os01g60020Os.4384.1.S1_at11/111+35019726..35021240No apical meristem protein, expressed
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23865.1.S1_at--874--931Chr01:35017789..35017813 (25 bp)
AGGCAAAGGCTCTTGTCCGGAGCAT
LOC_Os01g60010
OsAffx.23865.1.S1_at--566--151Chr01:35017860..35017884 (25 bp)
ATTAGACCTCTTTGCAAGGCTCGTC
LOC_Os01g60010
OsAffx.23865.1.S1_at--765--2931Chr01:35017875..35017899 (25 bp)
AAGGCTCGTCAGGTTCAGGAGGCAA
LOC_Os01g60010
OsAffx.23865.1.S1_at--1125--6011Chr01:35017925..35017949 (25 bp)
GAGAGGGCTGTCACCTTCAGTGAGA
LOC_Os01g60010
OsAffx.23865.1.S1_at--1155--591Chr01:35017957..35017981 (25 bp)
ATGCGTTACTCGATGTGGCTAGAAG
LOC_Os01g60010
OsAffx.23865.1.S1_at--604--8311Chr01:35017973..35017997 (25 bp)
GGCTAGAAGCCCCATTGAGGTGTTT
LOC_Os01g60010
OsAffx.23865.1.S1_at--42--5411Chr01:35018102..35018126 (25 bp)
GAAGCTCTGGAGTGCAATGCCTGCA
LOC_Os01g60010
OsAffx.23865.1.S1_at--329--6231Chr01:35018165..35018189 (25 bp)
GATACACGGTTTATTCCTTAATGGG
LOC_Os01g60010
OsAffx.23865.1.S1_at--276--5551Chr01:35018225..35018249 (25 bp)
GAAAGCCAAGGGATTTCCACCTGAG
LOC_Os01g60010
OsAffx.23865.1.S1_at--792--9871Chr01:35018269..35018293 (25 bp)
TACAGGCTTGGCTTTCAGGCAGAGA
LOC_Os01g60010
OsAffx.23865.1.S1_at--1101--2911Chr01:35018301..35018325 (25 bp)
AAGGCTTCAGCTTCAGTGGGTTCAA
LOC_Os01g60010
Target Sequence 
AGGCAAAGGCTCTTGTCCGGAGCATGGAGGAGAAGGGGGTTGCCCCAGACACGGCCACTTTCAACTCCCTCATTAGACCT
CTTTGCAAGGCTCGTCAGGTTCAGGAGGCAAGGAAAATGCTTGATGACATGTTAGGGAGAGGGCTGTCACCTTCAGTGAG
AACATTTCATGCGTTACTCGATGTGGCTAGAAGCCCCATTGAGGTGTTTGATCTGTTGGATAAGATGAAAGAATTGCAGT
GTGACCCAGAGATGGACACTTTCATTATGTTGATCAGGAAATTCTGCCGGTGGAGGCAACATGACAGTGTGGAGAAGCTC
TGGAGTGCAATGCCTGCAAATGGGCTAAGCCCTGATAGGAGTGCGTATATTGTATTGATACACGGTTTATTCCTTAATGG
GAGACTGGAGGAGTCAGCAAAGTATTACGAAGAGATGAAAGCCAAGGGATTTCCACCTGAGAAGAAGACTGAAGAAATGA
TACAGGCTTGGCTTTCAGGCAGAGAGCTTGCCAAGGCTTCAGCTTCAGTGGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis