Browse Element(s) Details


Os.18605.1.S1_s_at

Description gb:AU031004
DB_XREF= gi:3766894
DB_XREF=AU031004
CLONE=E60551_2Z
TID=Os.18605.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18605 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200728.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6000011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed
LOC_Os01g60020Os.4384.1.S1_at11/111+35019726..35021240No apical meristem protein, expressed
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18605.1.S1_s_at--835--611Chr01:35012880..35012904 (25 bp)
ATGCATATGCGAGTGCTCATAGATG
LOC_Os01g60000
Os.18605.1.S1_s_at--433--6091Chr01:35012870..35012894 (25 bp)
GAGTGCTCATAGATGGAGCGAAGCT
LOC_Os01g60000
Os.18605.1.S1_s_at--37--9511Chr01:35012803..35012827 (25 bp)
TCTCCTGGATGCAGTGCTGTTGAAG
LOC_Os01g60000
Os.18605.1.S1_s_at--311--6651Chr01:35012785..35012809 (25 bp)
GTTGAAGCGGCTTAATCCGGCGAAC
LOC_Os01g60000
Os.18605.1.S1_s_at--100--9611Chr01:35012725..35012749 (25 bp)
TCATACTGTCAATCTGTGTGAATAT
LOC_Os01g60000
Os.18605.1.S1_s_at--399--7351Chr01:35012708..35012732 (25 bp)
GTGAATATAGATGTTCAGGCCTAGT
LOC_Os01g60000
Os.18605.1.S1_s_at--319--1311Chr01:35012700..35012724 (25 bp)
AGATGTTCAGGCCTAGTTGTCAACT
LOC_Os01g60000
Os.18605.1.S1_s_at--964--731Chr01:35012698..35012722 (25 bp)
ATGTTCAGGCCTAGTTGTCAACTTT
LOC_Os01g60000
Os.18605.1.S1_s_at--112--9611Chr01:35012659..35012683 (25 bp)
TCATACTTCTGTCATTTCAGCCTTT
LOC_Os01g60000
Os.18605.1.S1_s_at--1031--9451Chr01:35012652..35012676 (25 bp)
TCTGTCATTTCAGCCTTTATTACTG
LOC_Os01g60000
Os.18605.1.S1_s_at--991--3371Chr01:35012642..35012666 (25 bp)
CAGCCTTTATTACTGATTAAATCGA
LOC_Os01g60000
Target Sequence 
ATGCATATGCGAGTGCTCATAGATGGAGCGAAGCTNTGAACGTCAGGCAATGTNTGGCTGATACTGATGTGNGGAANTCT
CCTGGATGCAGTGCTGTTGAAGCGGCTTAATCCGGCGAACNCGTAGGTTCGTGACTAGCAAAGACNTACATTGCNTCATA
CTGTCAATCTGTGTGAATATAGATGTTCAGGCCTAGTTGTCAACTTTTNTGNGGAAATTTNTCATACTTCTGTCATTTCA
GCCTTTATTACTGATTAAATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18605.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis