Browse Element(s) Details


Os.6002.1.S1_at

Description gb:AK101729.1
DB_XREF= gi:32986938
TID=Os.6002.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ARF GAP-like zinc finger-containing protein ZiGA4 (P0432B10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061F19, full insert sequence.
FL= gb:AK101729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5985011/11GTPase activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6002.1.S1_at--60--2231Chr01:34945262..34945286 (25 bp)
ACAAGGGTCATTTCCGCCCAGAAAT
LOC_Os01g59850
Os.6002.1.S1_at--643--6851Chr01:34945331..34945355 (25 bp)
GTTTGCAACTGCGTGGAACCTAAAT
LOC_Os01g59850
Os.6002.1.S1_at--774--7711Chr01:34945372..34945396 (25 bp)
GGGTGTACCACACGCATCGAAGTAT
LOC_Os01g59850
Os.6002.1.S1_at--625--251Chr01:34945432..34945456 (25 bp)
ATATCTCGGATTTCATACTCTCTGG
LOC_Os01g59850
Os.6002.1.S1_at--427--331Chr01:34945446..34945470 (25 bp)
ATACTCTCTGGTTTCCTGTATATGA
LOC_Os01g59850
Os.6002.1.S1_at--27--2111Chr01:34945494..34945518 (25 bp)
ACAGGCGGGCTGGAGTTCTTTTTTG
LOC_Os01g59850
Os.6002.1.S1_at--756--2691Chr01:34945527..34945551 (25 bp)
AAGCTGCCCTTTTTCATTGCTGTTA
LOC_Os01g59850
Os.6002.1.S1_at--1130--8331Chr01:34945555..34945579 (25 bp)
TGTCTGGGACCCTGGTGAAACCTGC
LOC_Os01g59850
Os.6002.1.S1_at--629--2371Chr01:34945572..34945596 (25 bp)
AAACCTGCGGGTTTGTTCTCACCTG
LOC_Os01g59850
Os.6002.1.S1_at--590--7211Chr01:34945653..34945677 (25 bp)
GTCGTAGACGCATACCCATCAAATG
LOC_Os01g59850
Os.6002.1.S1_at--398--10231Chr01:34945786..34945810 (25 bp)
TATTGCTTTTCTTGGTACTACGTTG
LOC_Os01g59850
Target Sequence 
ACAAGGGTCATTTCCGCCCAGAAATCCATTCGAATGAATGCTGATAGTGGTGGACAGATAAGCGAAGCAGTTTGCAACTG
CGTGGAACCTAAATGGACCATGGGGTAGTCGGGTGTACCACACGCATCGAAGTATATTTGTGTCAAATCTGCACATTGAA
GTGAATATATATATCTCGGATTTCATACTCTCTGGTTTCCTGTATATGAGAAAGGAGTGTTCAGAATACCAAACAGGCGG
GCTGGAGTTCTTTTTTGCCTGAAGCAAGCTGCCCTTTTTCATTGCTGTTACCCTGTCTGGGACCCTGGTGAAACCTGCGG
GTTTGTTCTCACCTGGCTGTCATTTGACCTTATTGGGGTGTCCTTGTTAAACCCAATTGTCATTAAAAAAGGTCGTAGAC
GCATACCCATCAAATGACTAGATCATTTGCATTCTTTGGTTCTTCAGCATGAACTTGTGAAAATGTGTTGGTTCACCGAA
TGGACGGATTGTTGCGAGGTGTTATTTATTGAGAAGTAGTAGTATATTGCTTTTCTTGGTACTACGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis