Browse Element(s) Details


Os.26537.2.S1_x_at

Description gb:NM_190018.1
DB_XREF= gi:34907119
GEN=OSJNBa0052O12.25
TID=Os.26537.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26537 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative beta-glucosidase (OSJNBa0052O12.25), mRNA.
PROD=putative beta-glucosidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7052011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g70550Os.15260.1.S1_s_at11/111+41185276..41188676expressed protein
LOC_Os01g70550Os.42729.1.S1_at3/111+41185276..41188676expressed protein
LOC_Os01g70560Os.47972.1.S1_at11/111+41189635..41191216expressed protein
LOC_Os01g70570Os.35284.1.S1_s_at11/111+41191764..41195193phospholipid/glycerol acyltransferase family protein, putative, expressed
LOC_Os01g70580Os.52120.1.S1_x_at11/111+41195558..41198733Thiamin pyrophosphokinase, catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26537.2.S1_x_at--682--5651Chr01:41173172..41173283 (25 bp)
GACTTTATTGTCCACTGGGTACTAA
LOC_Os01g70520
Os.26537.2.S1_x_at--386--3731Chr01:41173280..41173304 (25 bp)
CTAAGACCCTTGGTATTCGGTGATT
LOC_Os01g70520
Os.26537.2.S1_x_at--782--5371Chr01:41173318..41173342 (25 bp)
GAAGAACATTGTCGGTTCTCGCCTT
LOC_Os01g70520
Os.26537.2.S1_x_at--444--6251Chr01:41173370..41173394 (25 bp)
GATGTCAAGGGTTCTCTAGATTTCA
LOC_Os01g70520
Os.26537.2.S1_x_at--19--3011Chr01:41173399..41173423 (25 bp)
AATGAATCACTACTACTCTCTCTAT
LOC_Os01g70520
Os.26537.2.S1_x_at--871--771Chr01:41173422..41173446 (25 bp)
ATGTGAATGATCGTCCTTTGGGTAA
LOC_Os01g70520
Os.26537.2.S1_x_at--461--7691Chr01:41173441..41173465 (25 bp)
GGGTAAGGGCACACGCGACTTTGTA
LOC_Os01g70520
Os.26537.2.S1_x_at--232--291Chr01:41174462..41174486 (25 bp)
ATAGGGAGTATCCTGACTGCACTAA
LOC_Os01g70520
Os.26537.2.S1_x_at--278--2311Chr01:41174616..41174640 (25 bp)
AAAGGCTACTTCGTGTGGTCATTCG
LOC_Os01g70520
Os.26537.2.S1_x_at--328--9431Chr01:41174638..41174662 (25 bp)
TCGTGGACGTGTTCGAGTACCTGAC
LOC_Os01g70520
Os.26537.2.S1_x_at--867--1991Chr01:41174749..41174773 (25 bp)
ACTCCGGCTTCCTCAAGAACAGGGA
LOC_Os01g70520
Target Sequence 
GACTTTATTGTCCACTGGGTACTAAGACCCTTGGTATTCGGTGATTACCCACAAGTAATGAAGAACATTGTCGGTTCTCG
CCTTCCATCCTTCACAAAAGCCCAATCTGAAGATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTC
TCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATATCAATTTACTACAGAGGTTATGGA
TCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAG
GAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGT
ACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTC
CTCAAGAACAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26537.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis