Browse Element(s) Details


Os.15295.3.S1_x_at

Description gb:AK065852.1
DB_XREF= gi:32975870
TID=Os.15295.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013165E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041M02, full insert sequence.
FL= gb:AK065852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7046011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15295.3.S1_x_at--180--4611Chr01:41134206..41134230 (25 bp)
GCGACGTGCTGATGAGGCCCTTCGA
LOC_Os01g70460
Os.15295.3.S1_x_at--91--6311Chr01:41134216..41134240 (25 bp)
GATGAGGCCCTTCGACACGCAGACG
LOC_Os01g70460
Os.15295.3.S1_x_at--53--9271Chr01:41134287..41134442 (25 bp)
TCCTCGGCCTCAAGGGTGATCCGGT
LOC_Os01g70460
Os.15295.3.S1_x_at--577--2871Chr01:41134777..41134801 (25 bp)
AAGTGTGTCTTTTGCAACGACGGCA
LOC_Os01g70460
Os.15295.3.S1_x_at--1138--6071Chr01:41134820..41134844 (25 bp)
GAGTAGTCGAGTGCCGTGTATGCAA
LOC_Os01g70460
Os.15295.3.S1_x_at--80--10531Chr01:41135075..41135099 (25 bp)
TTCAGGTTCTGGTTACTCTAGGCGC
LOC_Os01g70460
Os.15295.3.S1_x_at--504--10091Chr01:41135093..41135117 (25 bp)
TAGGCGCTTGTAGCCAGTGCCACTG
LOC_Os01g70460
Os.15295.3.S1_x_at--437--1131Chr01:41135108..41135132 (25 bp)
AGTGCCACTGAACATTTCTTTCCTT
LOC_Os01g70460
Os.15295.3.S1_x_at--331--5791Chr01:41135146..41135170 (25 bp)
GACGACAGGGTGATAGCTTGCATCT
LOC_Os01g70460
Os.15295.3.S1_x_at--312--1551Chr01:41135160..41135184 (25 bp)
AGCTTGCATCTGATTATCTGAAACA
LOC_Os01g70460
Os.15295.3.S1_x_at--824--1411Chr01:41135205..41135229 (25 bp)
AGAAATCTTCTATGTCTCGAGTTTT
LOC_Os01g70460
Target Sequence 
GCGACGTGCTGATGAGGCCCTTCGACACGCAGACGCTCCTCATCTCCGCCGCCGTCGTCTCCGCCGTCTCCCTCTCCCTC
GTCCTCGGCCTCAAGGGTGATCCGGTGCCGTGCGAAAGGTGCGCCGGGAATGGAGGCACAAAGTGTGTCTTTTGCAACGA
CGGCAAGATGAAGGTTGAAAATGGAGTAGTCGAGTGCCGTGTATGCAAAGGAGCAGGGTTAATACTATGCAAGAAGTGTT
CAGGTTCTGGTTACTCTAGGCGCTTGTAGCCAGTGCCACTGAACATTTCTTTCCTTTTTGTTAACTATGGACGACAGGGT
GATAGCTTGCATCTGATTATCTGAAACAAGCTTTGTACAGATGAATGGAGAAATCTTCTATGTCTCGAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15295.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis