Browse Element(s) Details


Os.42735.1.S1_at

Description gb:CF306584
DB_XREF= gi:33678345
DB_XREF=HDA1--04-E11.g1
CLONE=HDA1--04-E11
TID=Os.42735.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine palmitoyltransferase (OSJNBa0052O12.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7036011/11Serine palmitoyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein
LOC_Os01g70350OsAffx.21841.1.S1_at9/111+41082603..41083734hypothetical protein
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42735.1.S1_at--831--8551Chr01:41087532..41087556 (25 bp)
TGGATCCGGCTGATGTTGACATCAT
LOC_Os01g70360
Os.42735.1.S1_at--934--8951Chr01:41087516..41087540 (25 bp)
TGACATCATGATGGGCACACTCTCA
LOC_Os01g70360
Os.42735.1.S1_at--177--8651Chr01:41087505..41087529 (25 bp)
TGGGCACACTCTCAAAGTCATTTGG
LOC_Os01g70360
Os.42735.1.S1_at--327--451Chr01:41087335..41087359 (25 bp)
ATCTCAAGCTTACATGTCCTTCACA
LOC_Os01g70360
Os.42735.1.S1_at--422--8711Chr01:41087321..41087345 (25 bp)
TGTCCTTCACATATCTATGGCACAT
LOC_Os01g70360
Os.42735.1.S1_at--1105--791Chr01:41087071..41087095 (25 bp)
ATGGGCTTTGAGGTTCTTGGAGATA
LOC_Os01g70360
Os.42735.1.S1_at--142--6471Chr01:41087050..41087074 (25 bp)
GATAATGACTCACCTGTCATGCCTT
LOC_Os01g70360
Os.42735.1.S1_at--721--591Chr01:41087032..41087056 (25 bp)
ATGCCTTTCATGGTCTACAATCCTG
LOC_Os01g70360
Os.42735.1.S1_at--408--8791Chr01:41086758..41086782 (25 bp)
TGTTCCGGTTGGATTTCCTGCTACA
LOC_Os01g70360
Os.42735.1.S1_at--787--3731Chr01:41086738..41086762 (25 bp)
CTACACCACTACTTCTTGGCAGAAT
LOC_Os01g70360
Os.42735.1.S1_at--958--3571Chr01:41086704..41086728 (25 bp)
CATTTCTGCTTCTCACTCAAGGGAA
LOC_Os01g70360
Target Sequence 
TGGATCCGGCTGATGTTGACATCATGATGGGCACACTCTCAAAGTCATTTGGATCGAGTGGAGGTTACATTGCAGCATCA
AAAGAGATTATTCAGCATCTCAAGCTTACATGTCCTTCACATATCTATGGCACATCCATGTCACCTCCTGCAGTCCAGCA
GGTCATCTCTGCAATGAAGGTTATTCTTGGGGAGGATGGAACTGACAGAGGGGCCAAGAAGATTGCTCAGATTAGAGATA
ACAGCAATTTCTTCCGTTCAGAGCTTCAGAAAATGGGCTTTGAGGTTCTTGGAGATAATGACTCACCTGTCATGCCTTTC
ATGGTCTACAATCCTGCTAAAATGCCTGCATTCTCAAGAGAGTGCCTGAAGCAAAATGTTGCTGTTGTTCCGGTTGGATT
TCCTGCTACACCACTACTTCTTGGCAGAATTAGGATATGCATTTCTGCTTCTCACTCAAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis