Browse Element(s) Details


OsAffx.4205.1.S1_x_at

Description tigr:9632.m05670
TID=OsAffx.4205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5805011/11expressed protein
LOC_Os01g702801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4205.1.S1_x_at--263--2811Chr04:34355382..34355406 (25 bp)
AAGATCACCTCGTACGCAGTGGTTA
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--6--8352Chr04:34355441..34355465 (25 bp)
GGCTGGCACTTACTGCATGGACACA
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--874--9431Chr04:34355488..34355512 (25 bp)
TCGGTGAGTGGATCTTGCCCTTCAA
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--425--2771Chr04:34355565..34355589 (25 bp)
AAGACCAACCACTTGGCTGCTACTG
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--412--5531Chr04:34355636..34355660 (25 bp)
GAAAACTTGGATGGAGCTTTCCCCA
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--435--7491Chr04:34355672..34355696 (25 bp)
GTGGGATTTATCCAACTCTCATCTT
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--327--10751Chr04:34355725..34355749 (25 bp)
TTGCAAGGTTTTTCTACACTCGCCA
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--249--9331Chr04:34355744..34355768 (25 bp)
TCGCCATCTCATGGGCTACTATTAT
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--485--9751Chr04:34355783..34355807 (25 bp)
TAATCGTTTTGTTGTCTTGACTGGT
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--394--7291Chr04:34355817..34355841 (25 bp)
GTGCCGTGTGTCCATGATACTAGTA
LOC_Os04g58050
OsAffx.4205.1.S1_x_at--379--671Chr04:34355887..34355911 (25 bp)
ATGAGTCTAAACTTCACGTGCCTAA
LOC_Os04g58050
Target Sequence 
AAGATCACCTCGTACGCAGTGGTTAGTGGTGGCTCTGAGATGTGCATATCGGTTGAAGGGGCTGGCACTTACTGCATGGA
CACAGTGAAGCATACATGGAGGCATGTCGGTGAGTGGATCTTGCCCTTCAACGGCAAGGTTAAGTATGTACCCGAGCTCA
AGCTCTGGTTTGGCCTCTCTGCCAAGACCAACCACTTGGCTGCTACTGACCTCTCCGCCATGGACGACGACTGCTTCCAG
CAGCCAGAGCTATTGAAAACTTGGATGGAGCTTTCCCCACCCAAGAATTGGTGGGATTTATCCAACTCTCATCTTGTCAG
TCTGGGCTCTGGCAGGTTCTGCATTGCAAGGTTTTTCTACACTCGCCATCTCATGGGCTACTATTATGATCAAATAGTTG
ATAATCGTTTTGTTGTCTTGACTGGTGTCGATGTCGTGCCGTGTGTCCATGATACTAGTAGTGGCATTGCAAATGGCGGC
ACGGGGGATCTCCGAATGATCAAGTATGAGTCTAAACTTCACGTGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4205.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis