Browse Element(s) Details


Os.50627.1.S1_at

Description gb:AK122185.1
DB_XREF= gi:37991831
TID=Os.50627.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150K05, full insert sequence.
FL= gb:AK122185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5805011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50627.1.S1_at--1049--6112Chr04:34355932..34355956 (25 bp)
GAGTGTTCTGAATAATTTGGATCTT
LOC_Os04g58050
Os.50627.1.S1_at--122--7431Chr04:34355934..34355958 (25 bp)
GTGTTCTGAATAATTTGGATCTTGC
LOC_Os04g58050
Os.50627.1.S1_at--131--6731Chr04:34355936..34355960 (25 bp)
GTTCTGAATAATTTGGATCTTGCGT
LOC_Os04g58050
Os.50627.1.S1_at--97--10591Chr04:34355937..34355961 (25 bp)
TTCTGAATAATTTGGATCTTGCGTT
LOC_Os04g58050
Os.50627.1.S1_at--815--9471Chr04:34355938..34355962 (25 bp)
TCTGAATAATTTGGATCTTGCGTTC
LOC_Os04g58050
Os.50627.1.S1_at--301--8571Chr04:34355949..34355973 (25 bp)
TGGATCTTGCGTTCAACTCTCTTAT
LOC_Os04g58050
Os.50627.1.S1_at--76--7971Chr04:34355950..34355974 (25 bp)
GGATCTTGCGTTCAACTCTCTTATC
LOC_Os04g58050
Os.50627.1.S1_at--508--6431Chr04:34355951..34355975 (25 bp)
GATCTTGCGTTCAACTCTCTTATCT
LOC_Os04g58050
Os.50627.1.S1_at--561--431Chr04:34355952..34355976 (25 bp)
ATCTTGCGTTCAACTCTCTTATCTA
LOC_Os04g58050
Os.50627.1.S1_at--1067--9571Chr04:34355953..34355977 (25 bp)
TCTTGCGTTCAACTCTCTTATCTAT
LOC_Os04g58050
Os.50627.1.S1_at--365--3631Chr04:34355954..34355978 (25 bp)
CTTGCGTTCAACTCTCTTATCTATT
LOC_Os04g58050
Target Sequence 
GAGTGTTCTGAATAATTTGGATCTTGCGTTCAACTCTCTTATCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis