Browse Element(s) Details


OsAffx.14463.1.S1_at

Description tigr:9632.m05668
TID=OsAffx.14463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5803011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14463.1.S1_at--708--4411Chr04:34345997..34346021 (25 bp)
GCCACCGCCATGTATCTATGACAGA
LOC_Os04g58030
OsAffx.14463.1.S1_at--689--2131Chr04:34345977..34346001 (25 bp)
ACAGAGCATACTTGGGCAGGTACCT
LOC_Os04g58030
OsAffx.14463.1.S1_at--253--6051Chr04:34345951..34345975 (25 bp)
GAGATCAGTTCCTATGCTTTGCTTG
LOC_Os04g58030
OsAffx.14463.1.S1_at--683--10851Chr04:34345929..34345953 (25 bp)
TTGGTGACGGCTCGAACATCTGCAT
LOC_Os04g58030
OsAffx.14463.1.S1_at--524--4971Chr04:34345908..34345932 (25 bp)
GCATCTCTGTAAAAGGTGTCGGCAC
LOC_Os04g58030
OsAffx.14463.1.S1_at--299--611Chr04:34345870..34345894 (25 bp)
ATGCGGAGCTTCACATGGAGCCACC
LOC_Os04g58030
OsAffx.14463.1.S1_at--1032--5851Chr04:34345853..34345877 (25 bp)
GAGCCACCTCGGCAAATGGATGCTA
LOC_Os04g58030
OsAffx.14463.1.S1_at--39--9451Chr04:34345788..34345812 (25 bp)
TCTGGGTTGGCATTTCTGCCGACAC
LOC_Os04g58030
OsAffx.14463.1.S1_at--616--5411Chr04:34345673..34345697 (25 bp)
GAAGCGATGCAAGGATTCTCAACTT
LOC_Os04g58030
OsAffx.14463.1.S1_at--1014--2511Chr04:34345653..34345677 (25 bp)
AACTTGTCAACCTTGGCTCGGGCAA
LOC_Os04g58030
OsAffx.14463.1.S1_at--408--7791Chr04:34345532..34345556 (25 bp)
GGTGCCGAGTGTTTATCATGCCAAT
LOC_Os04g58030
Target Sequence 
GCCACCGCCATGTATCTATGACAGAGCATACTTGGGCAGGTACCTGGAGATCAGTTCCTATGCTTTGCTTGGTGACGGCT
CGAACATCTGCATCTCTGTAAAAGGTGTCGGCACCTATTGTATGGACATGCGGAGCTTCACATGGAGCCACCTCGGCAAA
TGGATGCTACCCTTCACCGGCAAGGTTGAGTATGTACCTGAGCTCAAGCTCTGGGTTGGCATTTCTGCCGACACCCAAGA
CTTGGCTGCTGCTGATCTCTCATCGATGAATTCCCAGCCACAGCTACTAGCTACTTGTAAGGAGTTTGACCAGCCAGAGG
AATGGAAGCGATGCAAGGATTCTCAACTTGTCAACCTTGGCTCGGGCAAGTTCTGCATTGCAAGGTTCTTTCACAATAAG
ACTCCCCAAGGGGACTCCGATGAATTAATTGGGAAGAACATTACTGTCTTGACCGGTGTGGAGGTGGTGCCGAGTGTTTA
TCATGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis