Browse Element(s) Details


Os.53477.1.S1_at

Description gb:AK072874.1
DB_XREF= gi:32982897
TID=Os.53477.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145I07, full insert sequence.
FL= gb:AK072874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g580002/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009657biological_processplastid organization and biogenesis
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0009790biological_processembryonic development
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010116biological_processpositive regulation of abscisic acid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53477.1.S1_at--293--3351Chr04:34322763..34322783 (21 bp)
CACGGGTGGCTTTGTGAAGCAGCAT
LOC_Os04g58000
Os.53477.1.S1_at--296--5391NONE
GAAGCAGCATGGTCTCCAGACAGGG
NONE
Os.53477.1.S1_at--244--3031Chr04:34322412..34322436 (25 bp)
AATGCGGGTTCGCTATCAGCCTGCT
LOC_Os04g58000
Os.53477.1.S1_at--930--1671Chr04:34322395..34322419 (25 bp)
AGCCTGCTGACTAAGAAAACCTGAT
NONE
Os.53477.1.S1_at--254--2631Chr04:34322378..34322402 (25 bp)
AACCTGATGTGGAATGGCAGCTTCA
NONE
Os.53477.1.S1_at--1107--8491Chr04:34322364..34322388 (25 bp)
TGGCAGCTTCATGTCTTGAGACCAT
NONE
Os.53477.1.S1_at--130--6011Chr04:34322347..34322371 (25 bp)
GAGACCATCATCTGAAAGCCTCATT
NONE
Os.53477.1.S1_at--948--4451Chr04:34322330..34322354 (25 bp)
GCCTCATTACAAGGCAATGCATTTT
NONE
Os.53477.1.S1_at--593--10851NONE
TTGGAGAATGTGTTGTCCCACACTT
NONE
Os.53477.1.S1_at--230--6631Chr04:34322289..34322524 (25 bp)
GTTGTCCCACACTTTTAACTTCATA
NONE
Os.53477.1.S1_at--1114--1131Chr04:34322207..34322231 (25 bp)
AGTCCACATCAGAGATTGCAACAGC
NONE
Target Sequence 
CACGGGTGGCTTTGTGAAGCAGCATGGTCTCCAGACAGGGGACATATTCATCATCTACAAAAGCTCGGAGTCTGAGAAAT
TAGTTGTTCGTGGGGAGAAGGCCATTAAGCCGAATGTCATCATGCCTATTGTGGACTGCAGCTGCAAAAATGATCTCAAC
AACAGCGAAGAATGCGGGTTCGCTATCAGCCTGCTGACTAAGAAAACCTGATGTGGAATGGCAGCTTCATGTCTTGAGAC
CATCATCTGAAAGCCTCATTACAAGGCAATGCATTTTTGTTATTGGAGAATGTGTTGTCCCACACTTTTAACTTCATAGA
TAAAAGTACAAGACTATGGATTATTATTTAGTAACTCTTTTTTTTTCCAAATAATAGTCCACATCAGAGATTGCAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis