Browse Element(s) Details


Os.15556.1.S1_at

Description gb:AK106166.1
DB_XREF= gi:32991375
TID=Os.15556.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-B07, full insert sequence.
FL= gb:AK106166.1 gb:AK068623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5802011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15556.1.S1_at--573--7771Chr04:34336642..34336666 (25 bp)
GGTCCTCTTGTGTCCGCAGTTGGCA
LOC_Os04g58020
Os.15556.1.S1_at--831--4751Chr04:34336594..34336618 (25 bp)
GCTGCACCTCATATAGCCTATGGCA
LOC_Os04g58020
Os.15556.1.S1_at--890--9731Chr04:34336415..34336439 (25 bp)
TCAATGCATGCTGTTATGTCTCAAT
LOC_Os04g58020
Os.15556.1.S1_at--346--8131Chr04:34336332..34336356 (25 bp)
GGACATCCTGGACTGTATTTATCAT
LOC_Os04g58020
Os.15556.1.S1_at--690--10351Chr04:34336315..34336339 (25 bp)
TTTATCATCTTTGTTACGCCTGCAC
LOC_Os04g58020
Os.15556.1.S1_at--816--9011Chr04:34336295..34336319 (25 bp)
TGCACTTCGTTCCATCTTCAATGTA
LOC_Os04g58020
Os.15556.1.S1_at--607--4171Chr04:34336261..34336285 (25 bp)
CCCTGCCCCAGTCGTAAAATGGTTG
LOC_Os04g58020
Os.15556.1.S1_at--894--8571Chr04:34336242..34336266 (25 bp)
TGGTTGGAATGCTGAATCTCCTTCA
LOC_Os04g58020
Os.15556.1.S1_at--798--3811Chr04:34336225..34336249 (25 bp)
CTCCTTCAGCCCAGATGTAGTGGTT
LOC_Os04g58020
Os.15556.1.S1_at--1091--7051Chr04:34336141..34336165 (25 bp)
GTAAGTATCCGACTATCTGATTCGT
LOC_Os04g58020
Os.15556.1.S1_at--32--8591Chr04:34336098..34336122 (25 bp)
TGGTTCACTACCTGATTCGTACTAG
LOC_Os04g58020
Target Sequence 
GGTCCTCTTGTGTCCGCAGTTGGCACTCCTGTTACACTTCCTGTTCNCTGCTGCACCTCATATAGCCTATGGCATGCATG
CCCCTGTCCCTGGAGCTGTAGTCCCNTGGTGCCCCAGTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCAACATC
TCATGGATGAGGGCTTTGAATNCTACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCAATGCATGC
TGTTATGTCTCAATAAAGCAATATCAATAAACTCTTGTACATTACAAATGGTTATTGAATGTAGCATTTTGNGGACATCC
TGGACTGTATTTATCATCTTTGTTACGCCTGCACTTCGTTCCATCTTCAATGTACGCCTGCCACCCTGCCCCAGTCGTAA
AATGGTTGGAATGCTGAATCTCCTTCAGCCCAGATGTAGTGGTTTATTATCTGAAAAGTAAATATCGAGTCAATACGTAA
TCATGAACATATGTAATGGTTCAGTAAGTATCCGACTATCTGATTCGTAATTATGAACAGATGTATTGGTTCACTACCTG
ATTCGTACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis