Browse Element(s) Details


Os.9005.1.S1_s_at

Description gb:AU095166
DB_XREF= gi:8857848
DB_XREF=AU095166
CLONE=E60424
TID=Os.9005.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9005 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5806011/11Protein arginine N-methyltransferase 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
GO:0016274molecular_functionprotein-arginine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9005.1.S1_s_at--593--6171Chr04:34365346..34365370 (25 bp)
GAGGATGAGCCAACTCATTGGCATC
LOC_Os04g58060
Os.9005.1.S1_s_at--1042--3411Chr04:34365479..34365503 (25 bp)
CAGACTATTCTGTACTTCCCTGATC
LOC_Os04g58060
Os.9005.1.S1_s_at--75--7011Chr04:34365490..34365514 (25 bp)
GTACTTCCCTGATCCTATAGAGGTG
LOC_Os04g58060
Os.9005.1.S1_s_at--532--9631Chr04:34365553..34365577 (25 bp)
TCAGAGTGAGGAAAACCCACGTTTT
LOC_Os04g58060
Os.9005.1.S1_s_at--1133--211Chr04:34365582..34366080 (25 bp)
ATATTCAACTAGATTGCACCACGGG
LOC_Os04g58060
Os.9005.1.S1_s_at--177--10731Chr04:34365595..34366093 (25 bp)
TTGCACCACGGGAGGCCAAACATTG
LOC_Os04g58060
Os.9005.1.S1_s_at--695--7751Chr04:34366120..34366144 (25 bp)
GGTGTTCTTAGTTTGCTGATCTGGA
LOC_Os04g58060
Os.9005.1.S1_s_at--226--10291Chr04:34366131..34366155 (25 bp)
TTTGCTGATCTGGATTCCCCGACTT
LOC_Os04g58060
Os.9005.1.S1_s_at--142--1071Chr04:34366184..34366208 (25 bp)
AGGGTCTCTTCCAGCAATCATGAAC
LOC_Os04g58060
Os.9005.1.S1_s_at--1126--7811Chr04:34366212..34366236 (25 bp)
GGTCATTGGCAATTGATGCTGAATT
LOC_Os04g58060
Os.9005.1.S1_s_at--345--7931Chr04:34366392..34366416 (25 bp)
GGATTGCATTATTTCAGTTTGTCGA
LOC_Os04g58060
Target Sequence 
GAGGATGAGCCAACTCATTGGCATCCAGACTATTCTGTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAG
AAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCAA
ACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTNATGGTAAGA
TCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCAT
GTTGATANCAGTAACGAGAATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTATTTTTTCT
AGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGANATAGGATTGCATTATTTCA
GTTTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9005.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis