Browse Element(s) Details


Os.57474.1.S1_x_at

Description gb:D21297.1
DB_XREF= gi:425792
TID=Os.57474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57474 (NCBI UniGene Cluster)
UG_TITLE=AD117 mRNA for pyruvate kinase, partial sequence
DEF=Oryza sativa AD117 mRNA for pyruvate kinase, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5811010/11Pyruvate kinase, cytosolic isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57474.1.S1_x_at--400--9971Chr04:34388144..34388168 (25 bp)
TACCGTCAGACAACTTCTTGGACAG
LOC_Os04g58110
Os.57474.1.S1_x_at--513--7091Chr04:34388140..34388164 (25 bp)
GTCAGACAACTTCTTGGACAGCATG
LOC_Os04g58110
Os.57474.1.S1_x_at--1122--3411Chr04:34388138..34388162 (25 bp)
CAGACAACTTCTTGGACAGCATGCA
LOC_Os04g58110
Os.57474.1.S1_x_at--1155--5591Chr04:34388136..34388160 (25 bp)
GACAACTTCTTGGACAGCATGCAAA
LOC_Os04g58110
Os.57474.1.S1_x_at--194--2531Chr04:34388133..34388157 (25 bp)
AACTTCTTGGACAGCATGCAAAGCG
LOC_Os04g58110
Os.57474.1.S1_x_at--590--10551Chr04:34388130..34388154 (25 bp)
TTCTTGGACAGCATGCAAAGCGCAT
LOC_Os04g58110
Os.57474.1.S1_x_at--923--10851Chr04:34388127..34388151 (25 bp)
TTGGACAGCATGCAAAGCGCATCAA
LOC_Os04g58110
Os.57474.1.S1_x_at--55--5651Chr04:34388124..34388148 (25 bp)
GACAGCATGCAAAGCGCATCAAGCT
LOC_Os04g58110
Os.57474.1.S1_x_at--212--3531Chr04:34388119..34388143 (25 bp)
CATGCAAAGCGCATCAAGCTGATGT
LOC_Os04g58110
Os.57474.1.S1_x_at--154--3851Chr04:34387460..34387483 (24 bp)
CTGCATTTATGGTTGCTAGAGGTGA
LOC_Os04g58110
Os.57474.1.S1_x_at--286--10711NONE
TTGCTAGAGGTGATCTTGGTATGGA
NONE
Target Sequence 
TACCGTCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTNAAAGGTTGAATACCAAGAGGGTGTTNGTA
AACTTCGCTGNGATCTTGAGGGNAACGNCTGCATTTATGGTTGCTAGAGGTGATCTTGGTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57474.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis