Browse Element(s) Details


OsAffx.14465.1.S1_s_at

Description tigr:9632.m05677
TID=OsAffx.14465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5812011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14465.1.S1_s_at--250--2851Chr04:34394086..34394110 (25 bp)
AAGTCGAAGAGCTGCGTGACCAAGG
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--993--5351Chr04:34394124..34394148 (25 bp)
GAAGAGGCTCATGTGCGGCAAGACC
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--833--9991Chr04:34394215..34394239 (25 bp)
TAGCTCGTTCTTGCCGCGATTCGAT
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--833--6551Chr04:34394237..34394261 (25 bp)
GATTCATCCATCGAATCCTTCGGTT
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--919--10611Chr04:34394255..34394279 (25 bp)
TTCGGTTTCGTAGTAGCCTTGATCA
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--281--4451Chr04:34394270..34394294 (25 bp)
GCCTTGATCATGGTAATTAGCTTGT
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--570--4931Chr04:34394289..34394313 (25 bp)
GCTTGTTTTGCCTGCTTGGTAAAGA
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--912--4971Chr04:34394329..34394353 (25 bp)
GCATGCTGCACTTGCATGAGTGCCT
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--890--1131Chr04:34394347..34394371 (25 bp)
AGTGCCTCTCATCTCATATATGTCG
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--233--751Chr04:34394395..34394419 (25 bp)
ATGTTTGTTGTTGTTCTAGTCTTCT
LOC_Os04g58120
OsAffx.14465.1.S1_s_at--109--831Chr04:34394446..34394470 (25 bp)
ATGGTAGGTCCTTTGTCGTGTGAAA
LOC_Os04g58120
Target Sequence 
AAGTCGAAGAGCTGCGTGACCAAGGAGGAGTGCCACAAGAAGAGGCTCATGTGCGGCAAGACCTGCACCATGTCGGCGCA
CACCAAGTGCTCCGCCAAGTGCTCCAAGTCCTGCATCCCCACCTGCGGCTAGCTCGTTCTTGCCGCGATTCGATTCATCC
ATCGAATCCTTCGGTTTCGTAGTAGCCTTGATCATGGTAATTAGCTTGTTTTGCCTGCTTGGTAAAGAAGGGAATAAGCA
GGGGCATGCTGCACTTGCATGAGTGCCTCTCATCTCATATATGTCGTCGAATTAATTTGTTTAGGCCCAATGTTTGTTGT
TGTTCTAGTCTTCTTAATTATATGGTGTTTTTGATGTTGCATGGTAGGTCCTTTGTCGTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14465.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis