Browse Element(s) Details


Os.11640.1.S1_at

Description gb:CB649701
DB_XREF= gi:29644694
DB_XREF=OSJNEb13M15.r
CLONE=OSJNEb13M15
TID=Os.11640.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11640 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_568194.1 (A.thaliana) katanin p80 subunit - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5813011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11640.1.S1_at--96--91Chr04:34395213..34395237 (25 bp)
ATTCCCGCTGATGGCACCAATGTTG
LOC_Os04g58130
Os.11640.1.S1_at--945--1231Chr04:34395182..34395206 (25 bp)
AGTTGCCATGGAGAGCTGTTCGTTC
LOC_Os04g58130
Os.11640.1.S1_at--402--1971Chr04:34395103..34395127 (25 bp)
ACTGTTTGTTCCTCTTGTACACACA
LOC_Os04g58130
Os.11640.1.S1_at--276--2651Chr04:34395076..34395100 (25 bp)
AACCAACAGTGCTCGAGATCCTTGT
LOC_Os04g58130
Os.11640.1.S1_at--465--6371Chr04:34395060..34395084 (25 bp)
GATCCTTGTCTGTTGTCACTTTTGA
LOC_Os04g58130
Os.11640.1.S1_at--1117--5391Chr04:34395032..34395056 (25 bp)
GAAGCTGCCATGAGCGGTGACATCT
LOC_Os04g58130
Os.11640.1.S1_at--19--1271Chr04:34394968..34394992 (25 bp)
AGATACCAGTTTGCCCTTGATAGAT
LOC_Os04g58130
Os.11640.1.S1_at--369--2991Chr04:34394920..34394944 (25 bp)
AATGTCAGCGATTGTAATGCCTTGC
LOC_Os04g58130
Os.11640.1.S1_at--1051--9411Chr04:34394877..34394901 (25 bp)
TCGTGTCTTGTGTTAGCGGGTTGCA
LOC_Os04g58130
Os.11640.1.S1_at--854--7911Chr04:34394834..34394858 (25 bp)
GGTTGTGATGTCTGGTCGATTCAAT
LOC_Os04g58130
Os.11640.1.S1_at--337--8831Chr04:34394791..34394815 (25 bp)
TGATTGAGCTCCTTGTACACCTGTA
LOC_Os04g58130
Target Sequence 
ATTCCCGCTGATGGCACCAATGTTGGGCATCAGTTGCCATGGAGAGCTGTTCGTTCGTGCCCAGTCACCGAGCTCCAAGG
CACAGCAGCAGTGGATAACATTTTGTTGCCACTGTTTGTTCCTCTTGTACACACACTAACCAACAGTGCTCGAGATCCTT
GTCTGTTGTCACTTTTGAAGGGAAGCTGCCATGAGCGGTGACATCTGCCGGCAGCGTTCTTCGCGTTTGTCTCATTGGTT
TCTGAAGATACCAGTTTGCCCTTGATAGATGTGGATGACCGTGAGATGGAGCGAATGTCAGCGATTGTAATGCCTTGCTG
GCTGTAGCCTCTTCTCTCGTGTCTTGTGTTAGCGGGTTGCATTTGATAGTTTATTGTTTGGTTGTGATGTCTGGTCGATT
CAATGACAAGATTGATGAAGAGTGATTGAGCTCCTTGTACACCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis