Browse Element(s) Details


Os.34882.1.S1_at

Description gb:AK069752.1
DB_XREF= gi:32979776
TID=Os.34882.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030K02, full insert sequence.
FL= gb:AK069752.1 gb:AK069563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5810011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34882.1.S1_at--842--4751Chr04:34382855..34382879 (25 bp)
GCTGCAACAAGCTATCTCGCAATTA
LOC_Os04g58100
Os.34882.1.S1_at--651--2491Chr04:34382809..34382833 (25 bp)
AACATTTTTCTTCTCAAGCTCCGAT
LOC_Os04g58100
Os.34882.1.S1_at--405--10731Chr04:34382652..34382799 (25 bp)
TTGCAGCGTTCCCTCAAAGCACGAA
LOC_Os04g58100
Os.34882.1.S1_at--712--6911Chr04:34382623..34382647 (25 bp)
GTAGCAGCTACAATGCTCGTGGCAT
LOC_Os04g58100
Os.34882.1.S1_at--752--7531Chr04:34382605..34382629 (25 bp)
GTGGCATCTGCGATATTCGCGTACC
LOC_Os04g58100
Os.34882.1.S1_at--85--4651Chr04:34382587..34382611 (25 bp)
GCGTACCTGCCCTTGAGAAGCATAC
LOC_Os04g58100
Os.34882.1.S1_at--235--3571Chr04:34382567..34382591 (25 bp)
CATACTTGTACTGATTGTGCTGGAA
LOC_Os04g58100
Os.34882.1.S1_at--1023--1331Chr04:34382480..34382504 (25 bp)
AGAGTGGTGGCTGCGAATCCCAGCT
LOC_Os04g58100
Os.34882.1.S1_at--563--7031Chr04:34382449..34382473 (25 bp)
GTACAGCTCTTGAGGCCTCAGGATA
LOC_Os04g58100
Os.34882.1.S1_at--734--7891Chr04:34382406..34382430 (25 bp)
GGTTGAGATCGAGATGACCCACATC
LOC_Os04g58100
Os.34882.1.S1_at--903--8211Chr04:34382204..34382228 (25 bp)
GGAATTTGGCTGTCTATCCTATGCA
LOC_Os04g58100
Target Sequence 
GCTGCAACAAGCTATCTCGCAATTAGAGGCACAAGTGCAAGCCGGAAACATTTTTCTTCTCAAGCTCCGATCCCTCCTGC
TTGCAGCGTTCCCTCAAAGCACGAACAAAGTAGCAGCTACAATGCTCGTGGCATCTGCGATATTCGCGTACCTGCCCTTG
AGAAGCATACTTGTACTGATTGTGCTGGAAGCATACACGAGGCATATGCCGGCGAGGAAGAAGAGCAGCGAGAAGTTGGT
GAGGAGACTGAGAGAGTGGTGGCTGCGAATCCCAGCTGCTCCTGTACAGCTCTTGAGGCCTCAGGATACCAGGAGATGGA
CATCGAGGTTGAGATCGAGATGACCCACATCGGAAATGTCGGTACTTTACACATGTATTATATGTACCTGTAAATTCATC
ATGTTGTTAGAAATGTTGATATATACGATCAGATTTTTGTGTTGAAATGGAAAGTACATATTGTNCAAAATGGAATTGTG
GGTGGATCGTATTTTGTATTGTGAATTTTTGTTGAAAGCTGCACTGAAGGAATTTGGCTGTCTATCCTATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis