Browse Element(s) Details


Os.55108.1.S1_at

Description gb:AK107505.1
DB_XREF= gi:32992714
TID=Os.55108.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E05, full insert sequence.
FL= gb:AK107505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5808011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55108.1.S1_at--387--7611Chr04:34377963..34377987 (25 bp)
GGGCAACAAGCTGTGCGGCAAGATA
LOC_Os04g58080
Os.55108.1.S1_at--402--9051Chr04:34378069..34378093 (25 bp)
TGCAGGCAGATTTGACCGGCGCCGC
LOC_Os04g58080
Os.55108.1.S1_at--486--7531Chr04:34378099..34378123 (25 bp)
GTGGCAGTGATTGCTGCTTCGCCAT
LOC_Os04g58080
Os.55108.1.S1_at--447--7371Chr04:34378126..34378150 (25 bp)
GTGACATATATGGTGCATTTCGATC
LOC_Os04g58080
Os.55108.1.S1_at--1058--10291Chr04:34378143..34378167 (25 bp)
TTTCGATCGGTACAGCACAAGACTA
LOC_Os04g58080
Os.55108.1.S1_at--272--5711Chr04:34378163..34378187 (25 bp)
GACTACTTTGTGTGAGATGTTTTAC
LOC_Os04g58080
Os.55108.1.S1_at--106--6951Chr04:34378206..34378230 (25 bp)
GTAGTAGTGCATTGTCTGATTTGTA
LOC_Os04g58080
Os.55108.1.S1_at--971--10151Chr04:34378232..34378256 (25 bp)
TATCTCCTGATCATATACTTTGTAA
LOC_Os04g58080
Os.55108.1.S1_at--335--6471Chr04:34378298..34378322 (25 bp)
GATAAATGTTGTGGTCGCACTGTAA
LOC_Os04g58080
Os.55108.1.S1_at--379--6971Chr04:34378354..34378378 (25 bp)
GTAGCTGCGTACTAATTTCGTTTCT
LOC_Os04g58080
Os.55108.1.S1_at--1141--191Chr04:34378368..34378392 (25 bp)
ATTTCGTTTCTGTCATACGTATCTA
LOC_Os04g58080
Target Sequence 
GGGCAACAAGCTGTGCGGCAAGATACCGCAGGCCAGGCCGTTCAACCTGCTCCCCGCCGCCGCGTACGCCGGCAACCTGT
GCCTCTGCGGCAAGCCGCTGCCGCCGTGCAGGCAGATTTGACCGGCGCCGCCGTGCGTGGCAGTGATTGCTGCTTCGCCA
TGGGTGACATATATGGTGCATTTCGATCGGTACAGCACAAGACTACTTTGTGTGAGATGTTTTACGAGGTTTAGAGAAAT
AGAGTAGTAGTGCATTGTCTGATTTGTAATATCTCCTGATCATATACTTTGTAAATCGGGAAGTTACACAAATCTAGTTT
AGGGTAGAGGAGGATGATAAATGTTGTGGTCGCACTGTAAAATGATGACGTGGAAGTCGGTATTGGGCACTGTAGCTGCG
TACTAATTTCGTTTCTGTCATACGTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis