Browse Element(s) Details


Os.18359.1.S1_at

Description gb:AK106193.1
DB_XREF= gi:32991402
TID=Os.18359.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E04, full insert sequence.
FL= gb:AK106193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5817011/11fiber protein Fb34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18359.1.S1_at--320--10511Chr04:34424901..34424925 (25 bp)
TTCACGTTCGTGATCGCGGAGCTGT
LOC_Os04g58170
Os.18359.1.S1_at--628--5651Chr04:34425166..34425190 (25 bp)
GACAGACAGCACCTTGGTTCTCAAT
LOC_Os04g58170
Os.18359.1.S1_at--232--6731Chr04:34425182..34425206 (25 bp)
GTTCTCAATCCATTTGCCATTTGCA
LOC_Os04g58170
Os.18359.1.S1_at--975--4031Chr04:34425240..34425264 (25 bp)
CGATTGCTCTACTCTGTACATTTCA
LOC_Os04g58170
Os.18359.1.S1_at--115--7031Chr04:34425255..34425279 (25 bp)
GTACATTTCATTCTCATTGCTCAGT
LOC_Os04g58170
Os.18359.1.S1_at--271--6891Chr04:34425296..34425320 (25 bp)
GTATATCTGTAACTGCGTGGCTCAT
LOC_Os04g58170
Os.18359.1.S1_at--931--7531Chr04:34425312..34425336 (25 bp)
GTGGCTCATGTCTCTGTATTTTGGT
LOC_Os04g58170
Os.18359.1.S1_at--620--3711Chr04:34425340..34425364 (25 bp)
CTAGTTGAGTGCGTTCATGGTCATT
LOC_Os04g58170
Os.18359.1.S1_at--654--7811Chr04:34425358..34425382 (25 bp)
GGTCATTAATTGATCGGCCACCTGA
LOC_Os04g58170
Os.18359.1.S1_at--55--8431Chr04:34425373..34425397 (25 bp)
GGCCACCTGACCTGAAGTTTCTGTG
LOC_Os04g58170
Os.18359.1.S1_at--76--6051Chr04:34425399..34425423 (25 bp)
GAGATCGGCCACATTGACATGAAGT
LOC_Os04g58170
Target Sequence 
TTCACGTTCGTGATCGCGGAGCTGTGCCTGCTGGCGGGGTCGGTGCGGAACGCGTACCACACCAAGTACAGCACGCTGGT
GATTAGCGGGCCACCGCGCTGCGCGATGCTGCGCAAGGGCGTGTTCGCCGCCGGCGCCGCCTTCACCTTCCTCACCGCGC
TCTTCGCCGAGCTCCACTACCTCTTCTTCGCCAAGGCCCGCCACGCCGCCGCCGTGCCCCCGCCCATTGTCGGCGGCATC
GGCATGACCCGCATGTAGACAGAGTGACAGACAGCACCTTGGTTCTCAATCCATTTGCCATTTGCATCCCCCCTGACTTC
GACGCCCGCGTTGATACCTCGATTGCTCTACTCTGTACATTTCATTCTCATTGCTCAGTATCTGTAGTATATGGAGTATA
TCTGTAACTGCGTGGCTCATGTCTCTGTATTTTGGTATTCTAGTTGAGTGCGTTCATGGTCATTAATTGATCGGCCACCT
GACCTGAAGTTTCTGTGTGAGATCGGCCACATTGACATGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis