Browse Element(s) Details


OsAffx.4206.1.S1_at

Description tigr:9632.m05685
TID=OsAffx.4206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dof domain, zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5819011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4206.1.S1_at--376--9092Chr09:19328234..19328258 (25 bp)
TGCTCTTGGCAGACGATTGTTTCTC
NONE
OsAffx.4206.1.S1_at--742--9631Chr04:34435659..34435683 (25 bp)
TCAGGCCAGGACGTTGATACTCCAT
LOC_Os04g58190
OsAffx.4206.1.S1_at--40--7931Chr04:34435626..34435650 (25 bp)
GGATTGCTTGTGCTTGCAACACCTT
LOC_Os04g58190
OsAffx.4206.1.S1_at--560--8391Chr04:34435592..34435616 (25 bp)
GGCGCTTGGTGCATCTATTGACAGT
LOC_Os04g58190
OsAffx.4206.1.S1_at--948--1271Chr04:34435560..34435584 (25 bp)
AGATCATGCTCACTGTTCTCTACAG
LOC_Os04g58190
OsAffx.4206.1.S1_at--282--7431Chr04:34435521..34435545 (25 bp)
GTGTTCATCACTGCATCGTCTGAAT
LOC_Os04g58190
OsAffx.4206.1.S1_at--240--511Chr04:34435507..34435531 (25 bp)
ATCGTCTGAATCACTGTTTCTGCTG
LOC_Os04g58190
OsAffx.4206.1.S1_at--1159--5331Chr04:34435356..34435380 (25 bp)
GAAGTATTGTCATGCCTCCAGACAT
LOC_Os04g58190
OsAffx.4206.1.S1_at--548--1411Chr04:34435337..34435361 (25 bp)
AGACATACACGTGGGAGTCCTCACT
LOC_Os04g58190
OsAffx.4206.1.S1_at--1157--3391Chr04:34435308..34435332 (25 bp)
CAGACCACATATTTCCCGTTTGGAG
LOC_Os04g58190
OsAffx.4206.1.S1_at--709--8491Chr04:34435266..34435290 (25 bp)
TGGCTACTTGTATTTCGGAACCCTG
LOC_Os04g58190
Target Sequence 
TGCTCTTGGCAGACGATTGTTTCTCGTCAGGCCAGGACGTTGATACTCCATCCGCTGGAGGATTGCTTGTGCTTGCAACA
CCTTCACAAACTGGGCGCTTGGTGCATCTATTGACAGTGCCATTCAGATCATGCTCACTGTTCTCTACAGGGGCATCCCG
ACCCGTGTTCATCACTGCATCGTCTGAATCACTGTTTCTGCTGCTACGGGACCCGAATGAGCCACGGGATTCAGCGCCGG
GCCATGTGATAGCCACAGTGACATCATGGCAATGGAAATGCTCATATGAGTTGGTTACATCAACTGCACTCCTGCTTCTG
CTCGGATGGGAAGTATTGTCATGCCTCCAGACATACACGTGGGAGTCCTCACTGGCACAGACCACATATTTCCCGTTTGG
AGCTACAGAAGCGGATATTTGGCTACTTGTATTTCGGAACCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis