Browse Element(s) Details


OsAffx.26653.1.S1_at

Description tigr:9632.m05681
TID=OsAffx.26653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY057569 AT3g15480MJK13_14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5816010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26653.1.S1_at--849--4691Chr04:34421029..34421053 (25 bp)
GCGGCGTACGTGAACGTCGACCAGA
LOC_Os04g58160
OsAffx.26653.1.S1_at--830--1891Chr04:34421042..34421066 (25 bp)
ACGTCGACCAGAACGCGCGGCCGTA
LOC_Os04g58160
OsAffx.26653.1.S1_at--128--8391Chr04:34421060..34421084 (25 bp)
GGCCGTACTGCGTCTACGGCTCCGA
LOC_Os04g58160
OsAffx.26653.1.S1_at--397--3491Chr04:34421134..34421158 (25 bp)
CAGGCGATGATCATGGTGGCGACTC
LOC_Os04g58160
OsAffx.26653.1.S1_at--133--3511Chr04:34421145..34421169 (25 bp)
CATGGTGGCGACTCGGTGCTTCTGC
LOC_Os04g58160
OsAffx.26653.1.S1_at--607--3811NONE
CTGCTCCACCTCTGGTTTATTTTGT
NONE
OsAffx.26653.1.S1_at--744--10831Chr04:34421769..34421793 (25 bp)
TTGTGATAGATCTTCACCCAGCTCC
LOC_Os04g58160
OsAffx.26653.1.S1_at--961--4351Chr04:34421786..34421810 (25 bp)
CCAGCTCCGCTCCAATTTTAAATGA
LOC_Os04g58160
OsAffx.26653.1.S1_at--449--3171Chr04:34421817..34421841 (25 bp)
AATTGTTTGGTTGAGCGACGAAGCT
LOC_Os04g58160
OsAffx.26653.1.S1_at--425--5411Chr04:34421842..34421866 (25 bp)
GAAGCTGCACCAAACATACCTCGAG
LOC_Os04g58160
OsAffx.26653.1.S1_at--583--4291Chr04:34421860..34421884 (25 bp)
CCTCGAGATCGATGCCACTGGAAAG
LOC_Os04g58160
Target Sequence 
GCGGCGTACGTGAACGTCGACCAGAACGCGCGGCCGTACTGCGTCTACGGCTCCGACGCGGCGACGGGGTACGGCATCGG
GGCGCTGGTGCTGCTGGCGGCAGGGCAGGCGATGATCATGGTGGCGACTCGGTGCTTCTGCTGCGGCCGCGCGCTCTCGC
CGGGGCGGTGGCGCGCCTTCGCCGGCTTCTGCTTCATCACCTGCTGCTCCACCTCTGGTTTATTTTGTGATAGATCTTCA
CCCAGCTCCGCTCCAATTTTAAATGAAGTTAAAATTGTTTGGTTGAGCGACGAAGCTGAAGCTGCACCAAACATACCTCG
AGATCGATGCCACTGGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis