Browse Element(s) Details


OsAffx.29486.1.S1_x_at

Description gb:NM_193165.1
DB_XREF= gi:34913413
GEN=B1074C08.30
TID=OsAffx.29486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1074C08.30 (B1074C08.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g579701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29486.1.S1_x_at--748--3831Chr01:19322935..19322959 (25 bp)
CTGCGGAGCGGAGCTGGCAGCTGAA
NONE
OsAffx.29486.1.S1_x_at--392--4691Chr01:19323081..19323147 (25 bp)
GCGGCAGGCAGATGCACCTCGTCAT
NONE
OsAffx.29486.1.S1_x_at--918--2211Chr01:19323174..19323198 (25 bp)
ACAAGCACTTCCAGGTGCAGCAGCA
NONE
OsAffx.29486.1.S1_x_at--1080--1512Chr04:34315179..34315203 (25 bp)
AGCAGCAGCTCAAGGATCCATGGCC
LOC_Os04g57970
OsAffx.29486.1.S1_x_at--449--4131Chr01:19323222..19323246 (25 bp)
CGCATCCGGTTGTTCCAGTGGCGGC
NONE
OsAffx.29486.1.S1_x_at--534--1191Chr01:19323267..19323291 (25 bp)
AGTATGCGCCGTCGCTTATTGTCAA
NONE
OsAffx.29486.1.S1_x_at--170--5951Chr01:19323347..19323371 (25 bp)
GAGCACGAAGCGTCCACCGCTGCGT
NONE
OsAffx.29486.1.S1_x_at--557--7031Chr01:19323373..19323397 (25 bp)
GTACACCTCCTACGAGAGGCGGAGC
NONE
OsAffx.29486.1.S1_x_at--147--2751Chr01:19323414..19323438 (25 bp)
AAGAACACTCCATTCTCGAGTGGGA
NONE
OsAffx.29486.1.S1_x_at--125--6131Chr01:19323431..19323455 (25 bp)
GAGTGGGAGATCTCGTTGCCGCTCC
NONE
OsAffx.29486.1.S1_x_at--1009--6671Chr01:19323445..19323469 (25 bp)
GTTGCCGCTCCCAGGCGTGGCAGCA
NONE
Target Sequence 
CTGCGGAGCGGAGCTGGCAGCTGAAGCAGGCGGGCGAGTGCGCGGTGGCCGGCGGAGTAGCAGGCCGGCGGCGGCGGTGG
ACGAGCGCACAGCCGGCGGAGCGGCAGCGTCGGCCGAGCGGAGTGGCAACGACGGCGAGCGAGCGCGCGGCAGGCAGATG
CACCTCGTCATCCTCGTCATTTGGAAGCTCTCCGACCACAAGCACTTCCAGGTGCAGCAGCAGCTCAAGGATCCATGGCC
GCACCCGCATCCGGTTGTTCCAGTGGCGGCGGTCCTCCCCGCTGCGGCGGAGTATGCGCCGTCGCTTATTGTCAAGCCCA
AGGAGGAGTTCAACGCCGCGGCGGTAGTGTACGGCGGCGGCGGCATGCCGGAGCACGAAGCGTCCACCGCTGCGTCGTAC
ACCTCCTACGAGAGGCGGAGCCTTGCACCGCCGCCGCAAGAACACTCCATTCTCGAGTGGGAGATCTCGTTGCCGCTCCC
AGGCGTGGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29486.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis