Browse Element(s) Details


OsAffx.14459.1.S1_at

Description tigr:9632.m05658
TID=OsAffx.14459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thioredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5793010/11Thioredoxin X, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57880OsAffx.26649.1.S1_x_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57880Os.5248.1.S1_s_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57890Os.6190.1.S1_at11/114+34273015..34277438Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os04g57900OsAffx.4203.1.S1_at11/114+34279535..34281397expressed protein
LOC_Os04g57910NANA4+34282546..34284098transposon protein, putative, unclassified
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14459.1.S1_at--1031--3791Chr04:34294682..34294706 (25 bp)
CTCCGGCCTCGGTGGGTAGCTTCCG
LOC_Os04g57930
OsAffx.14459.1.S1_at--1118--4691Chr04:34294774..34294798 (25 bp)
GCGGCGGTGAGGTTCATCGGGCAGA
LOC_Os04g57930
OsAffx.14459.1.S1_at--978--7411Chr04:34294816..34294840 (25 bp)
GTGTTGCAGTCGGACCTGCCCGTGC
LOC_Os04g57930
OsAffx.14459.1.S1_at--554--4191NONE
CCGCCGAGGAATATGAAGGGAGATT
NONE
OsAffx.14459.1.S1_at--1008--6431Chr04:34295814..34295838 (25 bp)
GATCATGATGCCAATCCTCAACTGA
LOC_Os04g57930
OsAffx.14459.1.S1_at--89--6371Chr04:34295820..34295844 (25 bp)
GATGCCAATCCTCAACTGATTGAAG
LOC_Os04g57930
OsAffx.14459.1.S1_at--956--6071Chr04:34295844..34295868 (25 bp)
GAGTATAAGGTTTATGGTCTCCCAT
LOC_Os04g57930
OsAffx.14459.1.S1_at--1131--2891Chr04:34295850..34295874 (25 bp)
AAGGTTTATGGTCTCCCATCTCTTA
LOC_Os04g57930
OsAffx.14459.1.S1_at--1112--3791Chr04:34295862..34295886 (25 bp)
CTCCCATCTCTTATTCTATTCAAGG
LOC_Os04g57930
OsAffx.14459.1.S1_at--926--5311Chr04:34295911..34295935 (25 bp)
GAAGAGAAGGCGCAATTACAAAAGC
LOC_Os04g57930
OsAffx.14459.1.S1_at--881--2351Chr04:34295931..34295955 (25 bp)
AAAGCCAAGTTCAAGGAATACCTCG
LOC_Os04g57930
Target Sequence 
CTCCGGCCTCGGTGGGTAGCTTCCGCGTGGTGGGGCCCGCCGCCGCCCCACCCGGCGGCCGCCGCATCGCCAGCGCGCGC
GTGCGGTGTGGCGCGGCGGTGAGGTTCATCGGGCAGAGCGAGTTCGAGGCGGAGGTGTTGCAGTCGGACCTGCCCGTGCT
CGTCGACTTCGTCGCCGACTGGTGCGGGCCGTGCCGCCTCATCGCGCCCGTCGTCGACTGGGCCGCCGAGGAATATGAAG
GGAGATTAAAGATTGTCAAGATTGATCATGATGCCAATCCTCAACTGATTGAAGAGTATAAGGTTTATGGTCTCCCATCT
CTTATTCTATTCAAGGATGGGAAAGAGGTACCAGGGAGCAGAAGAGAAGGCGCAATTACAAAAGCCAAGTTCAAGGAATA
CCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis