Browse Element(s) Details


OsAffx.4203.1.S1_at

Description tigr:9632.m05655
TID=OsAffx.4203.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=38394-36551
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5790011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57880OsAffx.26649.1.S1_x_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57880Os.5248.1.S1_s_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57890Os.6190.1.S1_at11/114+34273015..34277438Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os04g57900OsAffx.4203.1.S1_at11/114+34279535..34281397expressed protein
LOC_Os04g57910NANA4+34282546..34284098transposon protein, putative, unclassified
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4203.1.S1_at--878--851Chr04:34280321..34280345 (25 bp)
ATGGCTGCGTGTTCTAAAACTGTTC
LOC_Os04g57900
OsAffx.4203.1.S1_at--410--2391Chr04:34280305..34280329 (25 bp)
AAACTGTTCACAGATCTTCTCAAGA
LOC_Os04g57900
OsAffx.4203.1.S1_at--290--2751Chr04:34280284..34280308 (25 bp)
AAGAAGCCCATAACACCCAATGTGC
LOC_Os04g57900
OsAffx.4203.1.S1_at--580--9791Chr04:34280274..34280298 (25 bp)
TAACACCCAATGTGCAAACGTGCAA
LOC_Os04g57900
OsAffx.4203.1.S1_at--616--191Chr04:34280242..34280266 (25 bp)
ATTTCATGCTTGTGCCGAGCTGGAA
LOC_Os04g57900
OsAffx.4203.1.S1_at--695--1611Chr04:34280225..34280249 (25 bp)
AGCTGGAAAGTTTCAGTTTGCCAAG
LOC_Os04g57900
OsAffx.4203.1.S1_at--944--3331Chr04:34280168..34280192 (25 bp)
CACTGTGACTTGTAACATTCTAATT
LOC_Os04g57900
OsAffx.4203.1.S1_at--757--111Chr04:34280146..34280170 (25 bp)
ATTCATGCATTCTATGAGGCCGGGA
LOC_Os04g57900
OsAffx.4203.1.S1_at--380--1551Chr04:34280112..34280136 (25 bp)
AGCTTGGTTTTCTGTTCGCTGATGT
LOC_Os04g57900
OsAffx.4203.1.S1_at--171--591Chr04:34280085..34280109 (25 bp)
ATGCGGGTAAAATTGCCCCAGATAC
LOC_Os04g57900
OsAffx.4203.1.S1_at--559--3151Chr04:34280075..34280099 (25 bp)
AATTGCCCCAGATACGATCACATAC
LOC_Os04g57900
Target Sequence 
ATGGCTGCGTGTTCTAAAACTGTTCACAGATCTTCTCAAGAAGCCCATAACACCCAATGTGCAAACGTGCAACATTTTTA
TTTCATGCTTGTGCCGAGCTGGAAAGTTTCAGTTTGCCAAGTTTGTGTTCAGCAGCAAGGGGTTCATGGCAGACACTGTG
ACTTGTAACATTCTAATTCATGCATTCTATGAGGCCGGGAAGGAGGATGAGCTTGGTTTTCTGTTCGCTGATGTGAATGC
GGGTAAAATTGCCCCAGATACGATCACATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis