Browse Element(s) Details


OsAffx.14460.1.S1_at

Description tigr:9632.m05660
TID=OsAffx.14460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dihydroorotate dehydrogenase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5795011/11Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57890Os.6190.1.S1_at11/114+34273015..34277438Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os04g57900OsAffx.4203.1.S1_at11/114+34279535..34281397expressed protein
LOC_Os04g57910NANA4+34282546..34284098transposon protein, putative, unclassified
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006207biological_process'de novo' pyrimidine base biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004152molecular_functiondihydroorotate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14460.1.S1_at--533--7111Chr04:34302753..34302777 (25 bp)
GTCATAAATGTCTCTTCCCCAAATA
LOC_Os04g57950
OsAffx.14460.1.S1_at--398--9911Chr04:34302776..34302800 (25 bp)
TACTCCTGGTCTTCGCAAATTACAA
LOC_Os04g57950
OsAffx.14460.1.S1_at--858--2971Chr04:34302933..34302957 (25 bp)
AATGGGCTGAAGATGGTCCTCCACC
LOC_Os04g57950
OsAffx.14460.1.S1_at--1066--7251Chr04:34302948..34302972 (25 bp)
GTCCTCCACCATTGCTTGTTAAGAT
LOC_Os04g57950
OsAffx.14460.1.S1_at--70--6391Chr04:34302970..34302994 (25 bp)
GATCGCACCGGACTTGTCTAAGCAA
LOC_Os04g57950
OsAffx.14460.1.S1_at--827--9891Chr04:34303291..34303315 (25 bp)
TACTATTTCAAGACCTTCTCCTGCA
LOC_Os04g57950
OsAffx.14460.1.S1_at--383--5631Chr04:34303316..34303340 (25 bp)
GACACACATCCATTGGCTCAGGAAG
LOC_Os04g57950
OsAffx.14460.1.S1_at--366--5571Chr04:34303540..34303564 (25 bp)
GAAAGATTCCCCTCATAGGCTGTGG
LOC_Os04g57950
OsAffx.14460.1.S1_at--298--5351Chr04:34303678..34303702 (25 bp)
GAAGATCCGTTCTGGAGCTACACTT
LOC_Os04g57950
OsAffx.14460.1.S1_at--746--6751Chr04:34303703..34303727 (25 bp)
GTTCAGCTTTACACTGCATTTGCCT
LOC_Os04g57950
OsAffx.14460.1.S1_at--932--4531Chr04:34303734..34303758 (25 bp)
GCCCAGCTCTTATACCCAGAATAAA
LOC_Os04g57950
Target Sequence 
GTCATAAATGTCTCTTCCCCAAATACTCCTGGTCTTCGCAAATTACAAGGTAGAAAACAGTTGAAAGATCTCGTGAAGAA
GGTGCAAGCTGCAAGAGACGAGATGCAATGGGCTGAAGATGGTCCTCCACCATTGCTTGTTAAGATCGCACCGGACTTGT
CTAAGCAAGATCTTGAGGATATTGCTGCGGTTGCTCTTGCTCTTAGGTTGGATGGCCTGATTATATCAAACACTACTATT
TCAAGACCTTCTCCTGCAGACACACATCCATTGGCTCAGGAAGCTGGTGGACTAAGTGGCAAACCTTTATTTGACCTATC
CACTAATGTTCTCAGGGAGATGTATATCCTTACCCGGGGAAAGATTCCCCTCATAGGCTGTGGTGGTGTAAGTAGTGGCG
AGGATGCATACAAGAAGATCCGTTCTGGAGCTACACTTGTTCAGCTTTACACTGCATTTGCCTATGGTGGCCCAGCTCTT
ATACCCAGAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis