Browse Element(s) Details


Os.54664.1.S1_at

Description gb:AK106412.1
DB_XREF= gi:32991621
TID=Os.54664.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A02, full insert sequence.
FL= gb:AK106412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5794011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57880OsAffx.26649.1.S1_x_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57880Os.5248.1.S1_s_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57890Os.6190.1.S1_at11/114+34273015..34277438Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os04g57900OsAffx.4203.1.S1_at11/114+34279535..34281397expressed protein
LOC_Os04g57910NANA4+34282546..34284098transposon protein, putative, unclassified
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54664.1.S1_at--115--4551Chr04:34296892..34296916 (25 bp)
GCCCTGGAGTTGTTGCCTGAAATTT
LOC_Os04g57940
Os.54664.1.S1_at--357--4931Chr04:34296849..34296873 (25 bp)
GCTTGTCAACTTCACAGCAACGAGA
LOC_Os04g57940
Os.54664.1.S1_at--314--3671Chr04:34296703..34296727 (25 bp)
CTATTTTGTTCGAGTCCATGCCTGA
LOC_Os04g57940
Os.54664.1.S1_at--1129--7251Chr04:34296690..34296714 (25 bp)
GTCCATGCCTGAGAACTGTTGCCAG
LOC_Os04g57940
Os.54664.1.S1_at--903--5111Chr04:34296665..34296689 (25 bp)
GCACACTTTCAATTTCCTATTTCCA
LOC_Os04g57940
Os.54664.1.S1_at--167--4891Chr04:34296615..34296639 (25 bp)
GCTTTGTACAAGCACCTGGTAGGCA
LOC_Os04g57940
Os.54664.1.S1_at--253--10091Chr04:34296596..34296620 (25 bp)
TAGGCATCACCTACGGTCTACAGAG
LOC_Os04g57940
Os.54664.1.S1_at--819--3111Chr04:34296543..34296567 (25 bp)
AATTTTTGGCTCGATGGATTTCTGC
LOC_Os04g57940
Os.54664.1.S1_at--1003--7931Chr04:34296528..34296552 (25 bp)
GGATTTCTGCATAACCTCGTGGGTA
LOC_Os04g57940
Os.54664.1.S1_at--624--10711Chr04:34296411..34296435 (25 bp)
TTGCTTAGCAATTACCCCTTCTATT
LOC_Os04g57940
Os.54664.1.S1_at--674--2891Chr04:34296378..34296402 (25 bp)
AAGGTACACACGCTGAGCCTCAATT
LOC_Os04g57940
Target Sequence 
GCCCTGGAGTTGTTGCCTGAAATTTTGGATGTGATCTGATGATGCTTGTCAACTTCACAGCAACGAGACTGCAGGCAGAC
GAGATGTAAAGCATGCACTTGAGCTTGTAGTTGTTGCTGTTAAGCATACATAATGGCAGCAGAGGTGAAAGGACTCAAGG
GGACAGAGAAGCCATGAAGCTGCCCATCTCTATTTTGTTCGAGTCCATGCCTGAGAACTGTTGCCAGGCACACTTTCAAT
TTCCTATTTCCATGTCAAAAGCTGAGAGAAGGCAAGCTTTGTACAAGCACCTGGTAGGCATCACCTACGGTCTACAGAGA
TAAGTTGATTGATTGTCCAAATGATGGAATTTTTGGCTCGATGGATTTCTGCATAACCTCGTGGGTAAAAAGTTGCACCT
GACCAACAAATACAATGTAAAAATTTAATCCTTCGTAAACGAAATTGGTTTTCAGTAGGGCAAATATTATCATTTGAACT
TGCTTAGCAATTACCCCTTCTATTGTTTTCTTAAGGTACACACGCTGAGCCTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis