Browse Element(s) Details


Os.6190.1.S1_at

Description gb:AK067609.1
DB_XREF= gi:32977627
TID=Os.6190.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112I09, full insert sequence.
FL= gb:AK099138.1 gb:AK067609.1 gb:AK058537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5789011/11Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57880OsAffx.26649.1.S1_x_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57880Os.5248.1.S1_s_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57890Os.6190.1.S1_at11/114+34273015..34277438Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os04g57900OsAffx.4203.1.S1_at11/114+34279535..34281397expressed protein
LOC_Os04g57910NANA4+34282546..34284098transposon protein, putative, unclassified
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004576molecular_functionoligosaccharyl transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6190.1.S1_at--691--6171Chr04:34273579..34273603 (25 bp)
GAGGAGGCATTCACAACTTCGAACT
LOC_Os04g57890
Os.6190.1.S1_at--1019--2511Chr04:34273565..34273589 (25 bp)
AACTTCGAACTGGATAGTGCGCATA
LOC_Os04g57890
Os.6190.1.S1_at--910--6691Chr04:34273431..34273455 (25 bp)
GTTCCTACAGGAGACGGGCAATTGA
LOC_Os04g57890
Os.6190.1.S1_at--509--9291Chr04:34273313..34273337 (25 bp)
TCCGTCTTCCCCTATATCATTTTGT
LOC_Os04g57890
Os.6190.1.S1_at--1027--9751Chr04:34273282..34273306 (25 bp)
TAATCAGGTGCCATTCAGAACTAGC
LOC_Os04g57890
Os.6190.1.S1_at--582--9131Chr04:34273254..34273278 (25 bp)
TGCGACGACCGAGTACTTTTTGATT
LOC_Os04g57890
Os.6190.1.S1_at--96--7851Chr04:34273220..34273244 (25 bp)
GGTATGACAGTACTCCAGATGTTTT
LOC_Os04g57890
Os.6190.1.S1_at--742--9811Chr04:34273102..34273126 (25 bp)
TAACTGTGGTTGCTCTGTTTTCCTC
LOC_Os04g57890
Os.6190.1.S1_at--179--8791Chr04:34273087..34273111 (25 bp)
TGTTTTCCTCTGTGAGCTCTCATCA
LOC_Os04g57890
Os.6190.1.S1_at--506--3751Chr04:34273069..34273093 (25 bp)
CTCATCATCTTGTGGCAATCGCAGT
LOC_Os04g57890
Os.6190.1.S1_at--21--531Chr04:34273052..34273076 (25 bp)
ATCGCAGTAGTCGTTTTTATGTTAA
LOC_Os04g57890
Target Sequence 
GAGGAGGCATTCACAACTTCGAACTGGATAGTGCGCATATACAAGGTCAAACCCCCGAAGAATAGGTCTTGAGGAGAGGA
ATCATCTCTTGGTTAGTATNTGGTGCTATTACCTTGAGGTACATTGTGTCAAGTCAAAACGTATTGGAGTTCCTACAGGA
GACGGGCAATTGATTTGAAAATCTGCATCAGCTGCCCCCAAGTGCGATCTTTTGTTTTGGTGAGACTGACGGAAGTAGAC
CATAGGTCAGTTTGAAGTAANGATCATCCGTCTTCCCCTATATCATTTTGTTAGATGTAATCAGGTGCCATTCAGAACTA
GCAATTGCGACGACCGAGTACTTTTTGATTGCTGAGCATGGTATGACAGTACTCCAGATGTTTTTGTAAGCACAACAGCT
TATTTGCGTAGTAACTTTANATCGGGTTACACGGGACACNTTNCAATTTTCTGGTGTTGAAGACAACAATGAATAACTTA
ACTGTGGTTGCTCTGTTTTCCTCTGTGAGCTCTCATCATCTTGTGGCAATCGCAGTAGTCGTTTTTATGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis