Browse Element(s) Details


OsAffx.14483.1.S1_at

Description tigr:9632.m05833
TID=OsAffx.14483.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5792011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57880OsAffx.26649.1.S1_x_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57880Os.5248.1.S1_s_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57890Os.6190.1.S1_at11/114+34273015..34277438Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os04g57900OsAffx.4203.1.S1_at11/114+34279535..34281397expressed protein
LOC_Os04g57910NANA4+34282546..34284098transposon protein, putative, unclassified
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009658biological_processchloroplast organization and biogenesis
GO:0010020biological_processchloroplast fission
GO:0009706cellular_componentchloroplast inner membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14483.1.S1_at--422--1851Chr04:34287539..34287563 (25 bp)
ACGAATGCTTCATCCATTGGACCGG
LOC_Os04g57920
OsAffx.14483.1.S1_at--791--6931Chr04:34287502..34287526 (25 bp)
GTAGTGGATATCTGCCCTAATCTGC
LOC_Os04g57920
OsAffx.14483.1.S1_at--848--1091Chr04:34287436..34287460 (25 bp)
AGTGGCACCATGGTTCCTTTGATAT
LOC_Os04g57920
OsAffx.14483.1.S1_at--50--211Chr04:34287413..34287437 (25 bp)
ATTTGCTTCAACATCCAGGCTGACA
LOC_Os04g57920
OsAffx.14483.1.S1_at--382--8531Chr04:34287335..34287359 (25 bp)
TGGATTCCCCAGTACTTTGCCAAGG
LOC_Os04g57920
OsAffx.14483.1.S1_at--302--3792Chr09:18399502..18399521 (20 bp)
CTCGAGACTCTGACCTTACATTGTG
NONE
OsAffx.14483.1.S1_at--212--5471Chr04:34287182..34287206 (25 bp)
GAACTATCGTACCAGAAGGGCCTTT
LOC_Os04g57920
OsAffx.14483.1.S1_at--317--8431Chr04:34287164..34287188 (25 bp)
GGCCTTTCAAATTTACTTATCTTCG
LOC_Os04g57920
OsAffx.14483.1.S1_at--889--3131Chr04:34287125..34287149 (25 bp)
AATTAGCTCTCTGTGGCCATGGAAA
LOC_Os04g57920
OsAffx.14483.1.S1_at--609--5731Chr04:34287091..34287115 (25 bp)
GACTGATGCCCTTGATTATGCTTAT
LOC_Os04g57920
OsAffx.14483.1.S1_at--325--2171Chr04:34286706..34286730 (25 bp)
ACACCTATATTGCACGGATACGCGA
LOC_Os04g57920
Target Sequence 
ACGAATGCTTCATCCATTGGACCGGCTTAAGCATTTGGTAGTGGATATCTGCCCTAATCTGCAAGAGATAGAACTGAATT
GTAGTCCAACAACACTTAAGTACAGTGGCACCATGGTTCCTTTGATATTTGCTTCAACATCCAGGCTGACAAATATTAGT
ATTGTATTCATCAATTACCAATCTGCTATTTCCTATATCATTACTGGATTCCCCAGTACTTTGCCAAGGCTCGAGACTCT
GACCTTACATTGTGGAGAACGTGAGAGAACTATCGTACCAGAAGGGCCTTTCAAATTTACTTATCTTCGGAATTTGAGGT
TGGAATTAGCTCTCTGTGGCCATGGAAATATCAGAAAGACTGATGCCCTTGATTATGCTTATATCCTGAAGATTGCTCCT
TTCATGGAAACACTGGAGTTGTCTGGGGGAACTTCTAAACAACCAAAGTTCTTTTTTTTTAGGCTAGTGAACACCTATAT
TGCACGGATACGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis