Browse Element(s) Details


Os.31816.2.S1_x_at

Description gb:CB096460
DB_XREF= gi:27920652
DB_XREF=AF53-Rpf_04_A22_T7_081.ab1
CLONE=C0001174
TID=Os.31816.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SUVH4 (P0482D04.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7022010/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70190Os.12406.1.S1_at6/111+40953240..40956348exostosin family protein, putative, expressed
LOC_Os01g70200Os.18736.1.S1_at11/111+40959968..40962961exostosin family protein, putative, expressed
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed
LOC_Os01g70230OsAffx.9651.1.S1_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70230OsAffx.9651.1.S1_x_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70250Os.23698.1.A1_at9/111+41001750..41004370DnaJ domain containing protein, expressed
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010216biological_processmaintenance of DNA methylation
GO:0016571biological_processhistone methylation
GO:0018022biological_processpeptidyl-lysine methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
GO:0046974molecular_functionhistone lysine N-methyltransferase activity (H3-K9 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31816.2.S1_x_at--1145--2431Chr01:40990549..40990573 (25 bp)
AAAAGGGCTGGCTCTGACATGCATC
LOC_Os01g70220
Os.31816.2.S1_x_at--743--471Chr01:40990571..40990595 (25 bp)
ATCTGCCGTCTCTTCATGCGGAGAA
LOC_Os01g70220
Os.31816.2.S1_x_at--747--1471Chr01:40990592..40990616 (25 bp)
AGAATGATTCAGATCCACCTGCACC
LOC_Os01g70220
Os.31816.2.S1_x_at--746--4711Chr01:40990633..40990657 (25 bp)
GCTGGCTCTATTGGCAACTTTGCAA
LOC_Os01g70220
Os.31816.2.S1_x_at--939--1191Chr01:40990679..40990703 (25 bp)
AGCCTAACCTTTTTGTCCAGTGTGT
LOC_Os01g70220
Os.31816.2.S1_x_at--265--7451Chr01:40990700..40990724 (25 bp)
GTGTCTTGAGCTCCCATAATGATGT
LOC_Os01g70220
Os.31816.2.S1_x_at--967--2311Chr01:40990734..40990758 (25 bp)
AAAGGTGACGCTCTTTGCTGCTGAC
LOC_Os01g70220
Os.31816.2.S1_x_at--1109--3991Chr01:40990951..40990975 (25 bp)
CGTACTGCCGGAAGCGACTTTATTA
LOC_Os01g70220
Os.31816.2.S1_x_at--313--5691Chr01:40990966..40990989 (24 bp)
GACTTTATTAGATCTGCACCTGTTC
LOC_Os01g70220
Os.31816.2.S1_x_at--225--5091NONE
GCACCTGTTCGCATCTATTTGGAAT
NONE
Os.31816.2.S1_x_at--626--10191Chr01:40991037..40991061 (25 bp)
TATATGTATTCAGTGCCAGGCGTGT
LOC_Os01g70220
Target Sequence 
AAAAGGGCTGGCTCTGACATGCATCTGCCGTCTCTTCATGCGGAGAATGATTCAGATCCACCTGCACCAGAGTATTGCAT
TGATGCTGGCTCTATTGGCAACTTTGCAAGGNTTATAAACCACAGCTGCNAGCCTAACCTTTTTGTCCAGTGTGTCTTGA
GCTCCCATAATGATGTTAAGCTGGCAAAGGTGACGCTCTTTGCTGCTGACACTATACTTCCTCTTNAGGAGCTTTCATAT
GATTATGGCTATGTCNTTGGACAGTGTTGTTGGGCCNTGATGGAAATATTGTCAAGCTGCCTTGCTTCTGTGGTGCACCG
TACTGCCGGAAGCGACTTTATTAGATCTGCACCTGTTCGCATCTATTTGGAATATGAACCACTCTAAACTACAATATATA
GTAGTATATGTATTCAGTGCCAGGCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31816.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis