Browse Element(s) Details


OsAffx.23986.2.S1_at

Description tigr:9629.m06937
TID=OsAffx.23986.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Heavy-metal-associated domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g702409/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed
LOC_Os01g70230OsAffx.9651.1.S1_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70230OsAffx.9651.1.S1_x_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70250Os.23698.1.A1_at9/111+41001750..41004370DnaJ domain containing protein, expressed
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23986.2.S1_at--168--9311NONE
TCCCTCCCTTCTGTAGAATACTGGA
NONE
OsAffx.23986.2.S1_at--1025--4271NONE
CCTCCCTTCTGTAGAATACTGGAAT
NONE
OsAffx.23986.2.S1_at--910--1471Chr01:40997122..40997146 (25 bp)
AGAATACTGGAATTGCTTGGCATGG
LOC_Os01g70240
OsAffx.23986.2.S1_at--400--9071Chr01:40997109..40997133 (25 bp)
TGCTTGGCATGGATGTCGTACACCC
LOC_Os01g70240
OsAffx.23986.2.S1_at--198--10871Chr01:40997106..40997130 (25 bp)
TTGGCATGGATGTCGTACACCCTTA
LOC_Os01g70240
OsAffx.23986.2.S1_at--142--5011Chr01:40997103..40997127 (25 bp)
GCATGGATGTCGTACACCCTTAGAT
LOC_Os01g70240
OsAffx.23986.2.S1_at--757--831Chr01:40997101..40997125 (25 bp)
ATGGATGTCGTACACCCTTAGATTA
LOC_Os01g70240
OsAffx.23986.2.S1_at--1138--7971Chr01:40997099..40997123 (25 bp)
GGATGTCGTACACCCTTAGATTACA
LOC_Os01g70240
OsAffx.23986.2.S1_at--542--7211Chr01:40997095..40997119 (25 bp)
GTCGTACACCCTTAGATTACAGCTA
LOC_Os01g70240
OsAffx.23986.2.S1_at--182--7031Chr01:40997092..40997116 (25 bp)
GTACACCCTTAGATTACAGCTAAGA
LOC_Os01g70240
OsAffx.23986.2.S1_at--936--5591Chr01:40997013..40997090 (25 bp)
GAAATATATTACTATCTATGGATGT
LOC_Os01g70240
Target Sequence 
TCCCTCCCTTCTGTAGAATACTGGAATTGCTTGGCATGGATGTCGTACACCCTTAGATTACAGCTAAGAAGAAATATATT
ACTATCTATGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23986.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis