Browse Element(s) Details


OsAffx.23986.1.S1_at

Description gb:NM_189988.1
DB_XREF= gi:34907059
GEN=P0482D04.23
TID=OsAffx.23986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0482D04.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g702406/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed
LOC_Os01g70230OsAffx.9651.1.S1_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70230OsAffx.9651.1.S1_x_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70250Os.23698.1.A1_at9/111+41001750..41004370DnaJ domain containing protein, expressed
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23986.1.S1_at--760--10491Chr01:40997479..40997502 (24 bp)
TTCAAATTCGGCACATGTGGCACAA
LOC_Os01g70240
OsAffx.23986.1.S1_at--701--3091Chr01:40997399..40997423 (25 bp)
AATACATCCATTTCATCCATTCATC
LOC_Os01g70240
OsAffx.23986.1.S1_at--795--571Chr01:40997385..40997409 (25 bp)
ATCCATTCATCCATCGTTATCGTAA
LOC_Os01g70240
OsAffx.23986.1.S1_at--517--7051Chr01:40997339..40997363 (25 bp)
GTAACAGCTACGTATATTTTGACCA
LOC_Os01g70240
OsAffx.23986.1.S1_at--358--171Chr01:40997324..40997348 (25 bp)
ATTTTGACCACATGCACGTGCTGAC
LOC_Os01g70240
OsAffx.23986.1.S1_at--1110--5751Chr01:40997305..40997326 (22 bp)
GACGTGCACGGATTTTATACTGCTA
LOC_Os01g70240
OsAffx.23986.1.S1_at--359--4351Chr01:40995195..40995219 (25 bp)
CCAGTGGATGGATGTCGTTTTCAGC
NONE
OsAffx.23986.1.S1_at--118--71Chr01:40995144..40995168 (25 bp)
ATTCGATCAGTATAACCAACGCCCA
NONE
OsAffx.23986.1.S1_at--71--4551Chr01:40995124..40995148 (25 bp)
GCCCAACACGCCTAGAGAATCGGAT
NONE
OsAffx.23986.1.S1_at--905--5231Chr01:40995108..40995132 (25 bp)
GAATCGGATCCATGTAGGGTACTAC
NONE
OsAffx.23986.1.S1_at--631--9951Chr01:40995086..40995110 (25 bp)
TACGCCAGCCAGGAGACACTTTTCT
NONE
Target Sequence 
TTCAAATTCGGCACATGTGGCACAATACGTTTTATTTGACCTAGAGTACATGTATACGGAATTAACTAATAATTATAGGC
AATACATCCATTTCATCCATTCATCCATCGTTATCGTAATAATTAACATGCTAAATGCCAGTAACAGCTACGTATATTTT
GACCACATGCACGTGCTGACGTGCACGGATTTTATACTGCTATCTATGGATGTCAATGATTTTGGCCACCCGACCATAGG
GTATGAGAGGCCACATGCTGTTGCCCACCATGCAGGACCATCTGAAACTCTGAACGACCCCAACCCAACCCAACACTACC
CAAACCAAAGCCAGTGGATGGATGTCGTTTTCAGCCAAGCTAACGATGATGCAAAGTACTTATTCGATCAGTATAACCAA
CGCCCAACACGCCTAGAGAATCGGATCCATGTAGGGTACTACGCCAGCCAGGAGACACTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis