Browse Element(s) Details


Os.53542.1.S1_at

Description gb:AK073201.1
DB_XREF= gi:32983224
TID=Os.53542.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021C11, full insert sequence.
FL= gb:AK073201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7024010/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed
LOC_Os01g70230OsAffx.9651.1.S1_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70230OsAffx.9651.1.S1_x_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70250Os.23698.1.A1_at9/111+41001750..41004370DnaJ domain containing protein, expressed
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53542.1.S1_at--562--6731Chr01:40995725..40995749 (25 bp)
GTTCATAGCAACTACTACTATCTAG
LOC_Os01g70240
Os.53542.1.S1_at--453--5151Chr01:40995718..40995742 (25 bp)
GCAACTACTACTATCTAGTGCATAC
LOC_Os01g70240
Os.53542.1.S1_at--414--3711Chr01:40995704..40995728 (25 bp)
CTAGTGCATACTATAGTCTACATAT
LOC_Os01g70240
Os.53542.1.S1_at--294--10591Chr01:40995605..40995629 (25 bp)
TTCTCTTTAGTTTCTTCTTGCAATT
LOC_Os01g70240
Os.53542.1.S1_at--486--10451Chr01:40995599..40995623 (25 bp)
TTAGTTTCTTCTTGCAATTTCTTTC
LOC_Os01g70240
Os.53542.1.S1_at--1088--3672Chr02:1384869..1385073 (25 bp)
CTTTCTTTCTCATGTTTTATTATTT
NONE
Os.53542.1.S1_at--844--1891Chr01:40995535..40995559 (25 bp)
ACGTATGATGGTAGGAAATGTGTAT
LOC_Os01g70240
Os.53542.1.S1_at--921--2291Chr01:40995520..40995544 (25 bp)
AAATGTGTATATTCTGCCCATAACT
LOC_Os01g70240
Os.53542.1.S1_at--922--10211Chr01:40995511..40995535 (25 bp)
TATTCTGCCCATAACTGTGCATTAT
LOC_Os01g70240
Os.53542.1.S1_at--957--2551Chr01:40995499..40995523 (25 bp)
AACTGTGCATTATAAAATCCTCTAT
LOC_Os01g70240
Os.53542.1.S1_at--1142--10411Chr01:40995490..40995514 (25 bp)
TTATAAAATCCTCTATTTGCAAGGT
NONE
Target Sequence 
GTTCATAGCAACTACTACTATCTAGTGCATACTATAGTCTACATATNGTGTTNCTNATATACTACTAATATATATAGANA
TATCTAGAAGCTANATAGCTGNNNNATTAATTGTTTATTTTTCTCTTTAGTTTCTTCTTGCAATTTCTTTCTTTCTCATG
TTTTATTATTTTTCTTTTTGATTGAAAATAACGTATGATGGTAGGAAATGTGTATATTCTGCCCATAACTGTGCATTATA
AAATCCTCTATTTGCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis