Browse Element(s) Details


Os.18736.1.S1_at

Description gb:AU032020
DB_XREF= gi:3767993
DB_XREF=AU032020
CLONE=R3208_6Z
TID=Os.18736.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D24978(R2878)~similar to Arabidopsis thaliana chromosome 1, At1g27440~unknown protein (P0482D04.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7020011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g70170Os.8049.1.S1_a_at11/111+40937374..40940298Transaldolase 2, putative, expressed
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed
LOC_Os01g70190Os.12406.1.S1_at6/111+40953240..40956348exostosin family protein, putative, expressed
LOC_Os01g70200Os.18736.1.S1_at11/111+40959968..40962961exostosin family protein, putative, expressed
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18736.1.S1_at--397--8851Chr01:40960521..40960545 (25 bp)
TGATGCTATCCCCTGGGAGGAGATT
LOC_Os01g70200
Os.18736.1.S1_at--862--5391Chr01:40960467..40960491 (25 bp)
GAAGCTGGACAGTATCCTGACATCC
LOC_Os01g70200
Os.18736.1.S1_at--521--4831Chr01:40960361..40960385 (25 bp)
GCTCAGGCAGGAGATGCATTCCATC
LOC_Os01g70200
Os.18736.1.S1_at--238--1271Chr01:40960336..40960360 (25 bp)
AGATACTGAATGGTCTCGCTCGCAA
LOC_Os01g70200
Os.18736.1.S1_at--763--10011Chr01:40960223..40960247 (25 bp)
TAGCATGCATCTCACTGCCTATAGA
LOC_Os01g70200
Os.18736.1.S1_at--1104--231Chr01:40960155..40960179 (25 bp)
ATATACTTGCGCCTTGAGATCACCA
LOC_Os01g70200
Os.18736.1.S1_at--110--6451Chr01:40960138..40960162 (25 bp)
GATCACCATGGTTGCATAGTGCTGA
LOC_Os01g70200
Os.18736.1.S1_at--916--10251Chr01:40960088..40960112 (25 bp)
TTTGTATCTTTTTCCCTGATAGCTA
LOC_Os01g70200
Os.18736.1.S1_at--169--91Chr01:40960047..40960071 (25 bp)
ATTCCTTTTCTTCCCATTAGCGGAT
LOC_Os01g70200
Os.18736.1.S1_at--781--671Chr01:40960024..40960048 (25 bp)
ATGAAATGCCGGCATTTGTCCGCTT
LOC_Os01g70200
Os.18736.1.S1_at--710--10251Chr01:40960010..40960034 (25 bp)
TTTGTCCGCTTTGTCCATATATGTG
LOC_Os01g70200
Target Sequence 
TGATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGGACAGTATCCTGACATCCA
TACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCT
GCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGNGAAAACGTCTTCTTGAA
GCCCGGGGAGAGGGCCCNTGAACTGGACTGCTGGACCGGTGGGCGACCNTGAANNGCCTTGGTAGCATGCATCTCACTGC
CTATAGANATGTAAAAACTTTTTTGNAAAAAGATATATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGT
TGCATAGTGCTGACCATAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCA
TTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis