Browse Element(s) Details


Os.34126.1.S1_at

Description gb:AK072752.1
DB_XREF= gi:32982775
TID=Os.34126.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, At1g27440 (P0482D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139D17, full insert sequence.
FL= gb:AK072752.1 gb:AK063916.1 gb:AK073976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7018011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70150OsAffx.21844.1.S1_at5/111+40928143..40929262hypothetical protein
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g70170Os.8049.1.S1_a_at11/111+40937374..40940298Transaldolase 2, putative, expressed
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed
LOC_Os01g70190Os.12406.1.S1_at6/111+40953240..40956348exostosin family protein, putative, expressed
LOC_Os01g70200Os.18736.1.S1_at11/111+40959968..40962961exostosin family protein, putative, expressed
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34126.1.S1_at--122--971Chr01:40943052..40943076 (25 bp)
AGGACGTGCCGAGGCTGGACACCAT
LOC_Os01g70180
Os.34126.1.S1_at--49--7631Chr01:40942833..40942857 (25 bp)
GGGACCAGGGCCTCGAGAACGACCT
LOC_Os01g70180
Os.34126.1.S1_at--742--5411Chr01:40942817..40942841 (25 bp)
GAACGACCTCAAGCCATGGTAGCCG
LOC_Os01g70180
Os.34126.1.S1_at--1120--6591Chr01:40942745..40942769 (25 bp)
GATTGGATCGCGAGAGATGTACATT
LOC_Os01g70180
Os.34126.1.S1_at--969--2071Chr01:40942725..40942749 (25 bp)
ACATTGATTGGTTCGTTTCTTCTGA
LOC_Os01g70180
Os.34126.1.S1_at--940--6831Chr01:40942711..40942735 (25 bp)
GTTTCTTCTGATTAAGCCGCTGTTA
LOC_Os01g70180
Os.34126.1.S1_at--25--9811Chr01:40942699..40942723 (25 bp)
TAAGCCGCTGTTAATTTCTTCTTCT
LOC_Os01g70180
Os.34126.1.S1_at--279--10371Chr01:40942641..40942665 (25 bp)
TTTTTTCTTTCAAGGAGGCGATCCG
LOC_Os01g70180
Os.34126.1.S1_at--897--8371Chr01:40942625..40942649 (25 bp)
GGCGATCCGTGTTCATGTATTGTGC
LOC_Os01g70180
Os.34126.1.S1_at--598--10831Chr01:40942598..40942622 (25 bp)
TTGTGCGTGCTTAATTAATCGTTGC
LOC_Os01g70180
Os.34126.1.S1_at--135--6671Chr01:40942578..40942602 (25 bp)
GTTGCAATGTGCACGATTTCTTCTA
LOC_Os01g70180
Target Sequence 
AGGACGTGCCGAGGCTGGACACCATCCTGGCGTCCGTCCCGCTCGACGAGGTCATCCGGAAGCAGCGGCTGCTGGCGTCC
CCGGCGATGAAGCAGGCCGTGCTGTTCCACCAGCCGGCGAGGCCCGGCGACGCGTTCCACCAGATACTCAACGGGCTCGC
GCGCAAGCTGCCGCACCCCAAGGGCGTCTTCCTCGAGCCCGGCGAGAAGGGCATCGACTGGGACCAGGGCCTCGAGAACG
ACCTCAAGCCATGGTAGCCGCCATGGATGATGAGCTATATACACACAGATTATAGAGACGAGACATGGATTGGATCGCGA
GAGATGTACATTGATTGGTTCGTTTCTTCTGATTAAGCCGCTGTTAATTTCTTCTTCTTTCTTTCTTTTTTCTAGTTTTT
TTTCCTTGTTGTTTTTTCTTTCAAGGAGGCGATCCGTGTTCATGTATTGTGCAATTGTGCGTGCTTAATTAATCGTTGCA
ATGTGCACGATTTCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis