Browse Element(s) Details


Os.18673.1.S1_at

Description gb:AK073357.1
DB_XREF= gi:32983380
TID=Os.18673.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin conjugating enzyme (P0482D04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027F19, full insert sequence.
FL= gb:AK073357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g701409/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70150OsAffx.21844.1.S1_at5/111+40928143..40929262hypothetical protein
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g70170Os.8049.1.S1_a_at11/111+40937374..40940298Transaldolase 2, putative, expressed
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18673.1.S1_at--456--8071Chr01:40924566..40924590 (25 bp)
GGAGCAATCTGCTTGGACATACTGA
LOC_Os01g70140
Os.18673.1.S1_at--1074--8531Chr01:40924533..40924557 (25 bp)
TGGAGCCCAGCCCTTACATTGAAGA
LOC_Os01g70140
Os.18673.1.S1_at--219--6371Chr01:40924461..40924485 (25 bp)
GATCCTCAGGATGCTGTCGTTGCAC
LOC_Os01g70140
Os.18673.1.S1_at--440--6671NONE
GTTGCACAACAGTACTTGCGTGACT
NONE
Os.18673.1.S1_at--218--91Chr01:40923354..40923378 (25 bp)
ATTCCACATTTTCTGCTACTGCTCG
LOC_Os01g70140
Os.18673.1.S1_at--995--2331Chr01:40923308..40923332 (25 bp)
AAAGAATTCCTCCACCGGCATGGAA
LOC_Os01g70140
Os.18673.1.S1_at--1137--1611Chr01:40923177..40923201 (25 bp)
AGCTGGTTGAGATGGGCTTCCCTGA
LOC_Os01g70140
Os.18673.1.S1_at--456--9771Chr01:40923012..40923036 (25 bp)
TAATGCTCCTGTTCTGCCATTTAAG
LOC_Os01g70140
Os.18673.1.S1_at--178--5711Chr01:40922936..40922960 (25 bp)
GACTGAACTGAACCTATCCTAACTT
LOC_Os01g70140
Os.18673.1.S1_at--961--10431Chr01:40922890..40922914 (25 bp)
TTATGGTTTCTTCCTATCATCCGTG
LOC_Os01g70140
Os.18673.1.S1_at--721--31Chr01:40922849..40922873 (25 bp)
ATTGTGTCAGGTTTGCCCCATGAAA
NONE
Target Sequence 
GGAGCAATCTGCTTGGACATACTGAAGGACCAATGGAGCCCAGCCCTTACATTGAAGACGGCACTGCTTTCCCTCCAAGC
TCTGCTTTCTGCCCCTGCACCTGATGATCCTCAGGATGCTGTCGTTGCACAACAGTACTTGCGTGACTATTCCACATTTT
CTGCTACTGCTCGCTACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGGTGCAGAAGCTGGTT
GAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTCTGAAGAGTGTCAATGGCGACGAGAACATGGCTCTTGAGAAGCT
CTGCTCTGGCTGANGGCCCTATAAGCCGATATGAACTGTAAATTGNATCCCCATTCGTTATAAGACAACAGTGCTTGCTA
ATGCTCCTGTTCTGCCATTTAAGTGTGGCTTTATGACNCTNTTCTATATAGGGGATTGGACCATGGGACGTTGGGACTGA
ACTGAACCTATCCTAACTTGACAGAGTTCGGTCATTNTTTTTATGGTTTCTTCCTATCATCCGTGGGCCTGAAGTAACGG
GATTGTGTCAGGTTTGCCCCATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis