Browse Element(s) Details


Os.9535.2.S1_x_at

Description gb:AK066457.1
DB_XREF= gi:32976475
TID=Os.9535.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C27491(C52031),AU085719(C52031)~similar to Arabidopsis thaliana chromosome 3, At3g18524~unknown protein (P0482D04.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065E10, full insert sequence.
FL= gb:AK066457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7016011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70150OsAffx.21844.1.S1_at5/111+40928143..40929262hypothetical protein
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g70170Os.8049.1.S1_a_at11/111+40937374..40940298Transaldolase 2, putative, expressed
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed
LOC_Os01g70190Os.12406.1.S1_at6/111+40953240..40956348exostosin family protein, putative, expressed
LOC_Os01g70200Os.18736.1.S1_at11/111+40959968..40962961exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9535.2.S1_x_at--160--1351Chr01:40936401..40936425 (25 bp)
AGAGTCACTGGCTCTTAGGCGAAAT
LOC_Os01g70160
Os.9535.2.S1_x_at--1105--2951Chr01:40936423..40936447 (25 bp)
AATGGCAGCAGCTCTGGCATTGAAC
LOC_Os01g70160
Os.9535.2.S1_x_at--135--4951Chr01:40936439..40936463 (25 bp)
GCATTGAACATTTAGCTGCTCAGAA
LOC_Os01g70160
Os.9535.2.S1_x_at--15--5271Chr01:40936513..40936537 (25 bp)
GAATCCACCAAGAGTTTATCCGCAA
LOC_Os01g70160
Os.9535.2.S1_x_at--594--5031Chr01:40936550..40936574 (25 bp)
GCAGTTTTGCAGTTGTCACTTCAGA
LOC_Os01g70160
Os.9535.2.S1_x_at--231--5351Chr01:40936573..40936597 (25 bp)
GAAGATGAAGATGTCTGCCCTACTT
LOC_Os01g70160
Os.9535.2.S1_x_at--734--7171Chr01:40936585..40936606 (22 bp)
GTCTGCCCTACTTGTCTAGAAGAAT
LOC_Os01g70160
Os.9535.2.S1_x_at--858--5231Chr01:40936706..40936730 (25 bp)
GAATACACTCCAGACAATCCGAAGA
LOC_Os01g70160
Os.9535.2.S1_x_at--199--9111Chr01:40936742..40936766 (25 bp)
TGCTCCCATCATTATCATCTTAGTT
LOC_Os01g70160
Os.9535.2.S1_x_at--290--8551Chr01:40936949..40936973 (25 bp)
TGGAGTTTTGTGAAACCCCATGAGA
LOC_Os01g70160
Os.9535.2.S1_x_at--270--6051Chr01:40936972..40936996 (25 bp)
GAGATTTCTCGCTGGTTGTATCAGT
LOC_Os01g70160
Target Sequence 
AGAGTCACTGGCTCTTAGGCGAAATGGCAGCAGCTCTGGCATTGAACATTTAGCTGCTCAGAAGAAATGGAGCAGCACTG
AACCTGAGGGTGAATATAAAGTCCATCNCTCTGAATCCACCAAGAGTTTATCCGCAAAATCGTATAACAGCAGTTTTGCA
GTTGTCACTTCAGAAGATGAAGATGTCTGCCCTACTTGTCTAGAAGAATACACTCCAGACAATCCGAAGATTATAGCTAA
ATGCTCCCATCATTATCATCTTAGTTGTATCTACGAATGGATGGAAAGNAAGTGATACTTGTCCGANNTTTGTGGGAAGG
AAATGGAGTTTTGTGAAACCCCATGAGAGATTTCTCGCTGGTTGTATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9535.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis