Browse Element(s) Details


OsAffx.21844.1.S1_at

Description tigr:9629.m06928
TID=OsAffx.21844.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g701505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70150OsAffx.21844.1.S1_at5/111+40928143..40929262hypothetical protein
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g70170Os.8049.1.S1_a_at11/111+40937374..40940298Transaldolase 2, putative, expressed
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed
LOC_Os01g70190Os.12406.1.S1_at6/111+40953240..40956348exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21844.1.S1_at--652--3751Chr01:40927901..40927925 (25 bp)
CTCAGCCTGATCAGCCGGCGGTAGC
NONE
OsAffx.21844.1.S1_at--858--3931Chr01:40927964..40927988 (25 bp)
CGGCGGAGGTGAAGCCCCTGACCAT
NONE
OsAffx.21844.1.S1_at--799--7351Chr01:40927972..40927996 (25 bp)
GTGAAGCCCCTGACCATCTTCTACA
NONE
OsAffx.21844.1.S1_at--212--1891Chr01:40928011..40928035 (25 bp)
ACGTTCCATCTCACGCAAGACAAGG
NONE
OsAffx.21844.1.S1_at--412--4111Chr01:40928024..40928138 (25 bp)
CGCAAGACAAGGCAGAGGATATCAT
NONE
OsAffx.21844.1.S1_at--214--251Chr01:40928132..40928156 (25 bp)
ATATCATGAACATGGCAGCCGGCGA
NONE
OsAffx.21844.1.S1_at--798--5391Chr01:40928247..40928407 (25 bp)
GAAGCTAAAGCGAGAGTTGCCCATT
LOC_Os01g70150
OsAffx.21844.1.S1_at--493--2351Chr01:40928253..40928413 (25 bp)
AAAGCGAGAGTTGCCCATTGCGAAC
LOC_Os01g70150
OsAffx.21844.1.S1_at--203--6051Chr01:40928396..40928420 (25 bp)
GAGTTGCCCATTGCGAACAAGAGAT
LOC_Os01g70150
OsAffx.21844.1.S1_at--914--2451Chr01:40928411..40928435 (25 bp)
AACAAGAGATCGTTGGTGCGCTTCT
LOC_Os01g70150
OsAffx.21844.1.S1_at--915--6031Chr01:40928416..40928440 (25 bp)
GAGATCGTTGGTGCGCTTCTTCCAG
LOC_Os01g70150
Target Sequence 
CTCAGCCTGATCAGCCGGCGGTAGCCGACGCTGCCGCCGTACCGTCGCCGCCGCCGACGACGACGGCGGAGGTGAAGCCC
CTGACCATCTTCTACAACGGCAGCGTCGCCACGTTCCATCTCACGCAAGACAAGGCAGAGGATATCATGAACATGGCAGC
CGGCGAGGAGGAGGAGGACGGCGGCGGCGGCGGCCGGCGGCAGTTGACGGCGGCGGCGGCGATATCGGCAAGCAGCAGCG
GCGACCAGCTGCTGGAGAAGCTAAAGCGAGAGTTGCCCATTGCGAACAAGAGATCGTTGGTGCGCTTCTTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis