Browse Element(s) Details


Os.12406.1.S1_at

Description gb:AK068465.1
DB_XREF= gi:32978483
TID=Os.12406.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D39982(S1682)~similar to Arabidopsis thaliana chromosome 1, At1g27440~unknown protein (P0482D04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156C14, full insert sequence.
FL= gb:AK068465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g701906/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70150OsAffx.21844.1.S1_at5/111+40928143..40929262hypothetical protein
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g70170Os.8049.1.S1_a_at11/111+40937374..40940298Transaldolase 2, putative, expressed
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed
LOC_Os01g70190Os.12406.1.S1_at6/111+40953240..40956348exostosin family protein, putative, expressed
LOC_Os01g70200Os.18736.1.S1_at11/111+40959968..40962961exostosin family protein, putative, expressed
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12406.1.S1_at--240--1731Chr01:40953593..40953617 (25 bp)
ACCATACATAGTTGCTGCTGTCCTC
LOC_Os01g70190
Os.12406.1.S1_at--1095--9891Chr01:40953453..40953477 (25 bp)
TACTACCTTTGCTTCTTTTTGAGAC
LOC_Os01g70190
Os.12406.1.S1_at--983--10351Chr01:40953438..40953462 (25 bp)
TTTTTGAGACGATGTGCCCTGCCTG
LOC_Os01g70190
Os.12406.1.S1_at--74--4431Chr01:40953401..40953425 (25 bp)
GCCAGTGACATTCCCTTGGTTTTTA
LOC_Os01g70190
Os.12406.1.S1_at--1040--10011Chr01:40953353..40953377 (25 bp)
TAGACAACTGGTACCTATAGGCGAT
LOC_Os01g70190
Os.12406.1.S1_at--554--10172Chr07:6838039..6838160 (25 bp)
TATACTTAAGTGCTACCTCCGTTTT
NONE
Os.12406.1.S1_at--473--131Chr01:40953008..40953032 (25 bp)
ATTCAGAGCCCCAATCCAGATGGAT
NONE
Os.12406.1.S1_at--699--7311Chr01:40952963..40952987 (25 bp)
GTGCTGCACTGTTTGCAAGGCTGCA
NONE
Os.12406.1.S1_at--252--1271Chr01:40952936..40952960 (25 bp)
AGATTTGGTGCTTGTGTTGTTCCTG
NONE
Os.12406.1.S1_at--100--10671Chr01:40952917..40952941 (25 bp)
TTCCTGGGCTTGCACAGATGTTTCA
NONE
Os.12406.1.S1_at--396--6831Chr01:40952898..40952922 (25 bp)
GTTTCATGTATCCAAAGTCCTGGGT
NONE
Target Sequence 
ACCATACATAGTTGCTGCTGTCCTCGCTTGTTTGTGCGCACAGCACATTCTTCAGAAGATCAGATGAGAGACTGATGATG
ATCAGTAAAAGAAAACCAAGCCAATCCGTTAAATGTAAAGCCTCCTTTCTTCCTTCCTCCTACTACCTTTGCTTCTTTTT
GAGACGATGTGCCCTGCCTGCCCTGCGCCCTTGCCAGTGACATTCCCTTGGTTTTTATGTTGTTGTTGCTGTAGTAGTAT
TAGACAACTGGTACCTATAGGCGATGAAGGTGTTGTATCATATACTTAAGTGCTACCTCCGTTTTTTAATAGATGACGCC
GTTGACTTTTTCTCACATGTTTGACCCTTCGNCTTATTCAAAAAATTTACGNNAATTATNACAACATTCAGAGCCCCAAT
CCAGATGGATGGATGGATTCCCCTGCCTGTGTGCTGCACTGTTTGCAAGGCTGCAGAAGATTTGGTGCTTGTGTTGTTCC
TGGGCTTGCACAGATGTTTCATGTATCCAAAGTCCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis