Browse Element(s) Details


OsAffx.19053.1.S1_at

Description tigr:9639.m02568
TID=OsAffx.19053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2845011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19053.1.S1_at--791--1391Chr11:15876878..15876902 (25 bp)
AGACGTCTACTCCTAATGTTGGCCA
LOC_Os11g28450
OsAffx.19053.1.S1_at--387--2971Chr11:15876864..15876888 (25 bp)
AATGTTGGCCACCTAGATTACTCAC
LOC_Os11g28450
OsAffx.19053.1.S1_at--1060--6551Chr11:15876849..15876873 (25 bp)
GATTACTCACCGAACAACTCATACA
LOC_Os11g28450
OsAffx.19053.1.S1_at--91--3271Chr11:15876835..15876859 (25 bp)
CAACTCATACATTTTTGGACATCTT
LOC_Os11g28450
OsAffx.19053.1.S1_at--605--8131Chr11:15876819..15876843 (25 bp)
GGACATCTTTATGCACTTCTATCAT
LOC_Os11g28450
OsAffx.19053.1.S1_at--225--3031Chr11:15876783..15876807 (25 bp)
AATCCAAGCATGATAAACCCTACTA
LOC_Os11g28450
OsAffx.19053.1.S1_at--669--4171Chr11:15876766..15876790 (25 bp)
CCCTACTAAAAACCCTCTGCAGAAT
LOC_Os11g28450
OsAffx.19053.1.S1_at--995--5551Chr11:15876739..15876763 (25 bp)
GAAAGTTCTTGAGGACCGTATTGCC
LOC_Os11g28450
OsAffx.19053.1.S1_at--236--6871Chr11:15876722..15876746 (25 bp)
GTATTGCCCCAGCATTCGACAAGGA
LOC_Os11g28450
OsAffx.19053.1.S1_at--533--3211Chr11:15876236..15876727 (25 bp)
CAAGGACCTAGACAGAGGGATGCTT
LOC_Os11g28450
OsAffx.19053.1.S1_at--1149--5771Chr11:15876218..15876242 (25 bp)
GATGCTTGGAAAGAAAGGCACCGCC
LOC_Os11g28450
Target Sequence 
AGACGTCTACTCCTAATGTTGGCCACCTAGATTACTCACCGAACAACTCATACATTTTTGGACATCTTTATGCACTTCTA
TCATATGGGGATCTTAATCCAAGCATGATAAACCCTACTAAAAACCCTCTGCAGAATATGAAAGTTCTTGAGGACCGTAT
TGCCCCAGCATTCGACAAGGACCTAGACAGAGGGATGCTTGGAAAGAAAGGCACCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis