Browse Element(s) Details


Os.51445.1.S1_at

Description gb:AK062824.1
DB_XREF= gi:32972842
TID=Os.51445.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F06, full insert sequence.
FL= gb:AK062824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1073011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10680NANA8+6287738..6288025hypothetical protein
LOC_Os08g10690NANA8+6291160..6291399hypothetical protein
LOC_Os08g10700NANA8+6292639..6292896hypothetical protein
LOC_Os08g10710OsAffx.30226.4.S1_at4/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.4.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.24587.1.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_x_at2/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.19052.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_x_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_s_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10730Os.51445.1.S1_at11/118+6307531..6309280expressed protein
LOC_Os08g10740Os.52305.2.S1_x_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10740Os.52305.1.S1_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10760OsAffx.14773.1.S1_at11/118+6318967..6320497hypothetical protein
LOC_Os08g10770NANA8+6322550..6327493retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10780Os.52707.1.S1_at10/118+6327947..6333275BED zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51445.1.S1_at--477--4431Chr08:6308105..6308129 (25 bp)
GCCATGTCAGTCGAGTCGGCAACAT
LOC_Os08g10730
Os.51445.1.S1_at--468--1151Chr08:6308063..6308087 (25 bp)
AGTCGCGCATACGAGCTGCTTGAAA
LOC_Os08g10730
Os.51445.1.S1_at--917--2231Chr08:6308023..6308047 (25 bp)
ACAATCCTCTTCTTATCAAGTCTCG
LOC_Os08g10730
Os.51445.1.S1_at--127--9811Chr08:6307936..6307960 (25 bp)
TAACGCTGCATTTCCATGGTGGCAT
LOC_Os08g10730
Os.51445.1.S1_at--1105--1231Chr08:6307903..6307927 (25 bp)
AGTTGTCCAGGAATGCCACCTTTAT
LOC_Os08g10730
Os.51445.1.S1_at--233--6451Chr08:6307875..6307899 (25 bp)
GATCACCTCCATGAATGGCGACCAA
LOC_Os08g10730
Os.51445.1.S1_at--742--1651Chr08:6307846..6307870 (25 bp)
AGCGCTATGTGTGCCTTATCGTTGA
LOC_Os08g10730
Os.51445.1.S1_at--303--8131Chr08:6307807..6307831 (25 bp)
GGACAGCGGTACTGGGCTTATCACC
LOC_Os08g10730
Os.51445.1.S1_at--1001--6491Chr08:6307722..6307746 (25 bp)
GATATGTTAGTTTGTCCCCTTATTA
LOC_Os08g10730
Os.51445.1.S1_at--775--6771Chr08:6307655..6307679 (25 bp)
GTTACTGTACTTTTCTGCAAGCACC
LOC_Os08g10730
Os.51445.1.S1_at--947--671Chr08:6307592..6307616 (25 bp)
ATGACTATGACTCTCGTAGCTTTTA
LOC_Os08g10730
Target Sequence 
GCCATGTCAGTCGAGTCGGCAACATTTCCGCTCATGCTGCCGAGTCGCGCATACGAGCTGCTTGAAAAGGAATTTGAGCA
AGACAATCCTCTTCTTATCAAGTCTCGCCTCCAACCCATGAACACTTGCTACAAAGGCAGTGTCGACGATATTGCTGACA
ATGCCACTATAACGCTGCATTTCCATGGTGGCATTGATTTGCAGTTGTCCAGGAATGCCACCTTTATGGAGATCACCTCC
ATGAATGGCGACCAAGAGGAGCGCTATGTGTGCCTTATCGTTGACAAGACGGTGGATGGGACAGCGGTACTGGGCTTATC
ACCCCAACTTGACCACAACATAGGATTTGATCTGGAGAACAAGCAGATCTCAATTTATCGCAAGATATGTTAGTTTGTCC
CCTTATTAATTACATTGTTAATTTTCTTCTACTAGCTAATTAGACTCATTGTTACTGTACTTTTCTGCAAGCACCATTCA
TATCTAATATATGCATGCTGATGAAATGTAATAATGACTATGACTCTCGTAGCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis