Browse Element(s) Details


OsAffx.14773.1.S1_at

Description tigr:9636.m01040
TID=OsAffx.14773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1076011/11hypothetical protein
LOC_Os05g206604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10710OsAffx.30226.4.S1_at4/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.4.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.24587.1.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_x_at2/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.19052.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_x_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_s_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10730Os.51445.1.S1_at11/118+6307531..6309280expressed protein
LOC_Os08g10740Os.52305.2.S1_x_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10740Os.52305.1.S1_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10760OsAffx.14773.1.S1_at11/118+6318967..6320497hypothetical protein
LOC_Os08g10770NANA8+6322550..6327493retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10780Os.52707.1.S1_at10/118+6327947..6333275BED zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14773.1.S1_at--6--2131Chr08:6319026..6319050 (25 bp)
ACAGTGCACATGTTGCTGCCGTTGC
LOC_Os08g10760
OsAffx.14773.1.S1_at--24--4791Chr08:6319040..6319064 (25 bp)
GCTGCCGTTGCGTTGATGAGACAGT
LOC_Os08g10760
OsAffx.14773.1.S1_at--338--3451Chr08:6319061..6319085 (25 bp)
CAGTCGGAAGTGTTGCCAGCAGCGT
LOC_Os08g10760
OsAffx.14773.1.S1_at--559--3411Chr08:6319077..6319101 (25 bp)
CAGCAGCGTCCACCGAGAGGATGAA
LOC_Os08g10760
OsAffx.14773.1.S1_at--992--5412Chr08:6319719..6319743 (25 bp)
GAAGCCATTTTGAGAAGACCAGTAC
LOC_Os08g10760
OsAffx.14773.1.S1_at--185--5131Chr08:6319768..6319792 (25 bp)
GCACAGATATTGTTGCCCAAGTGTT
LOC_Os08g10760
OsAffx.14773.1.S1_at--272--5632Chr08:6319793..6319817 (25 bp)
GACAAAGTCAAGCACATTCCTTCGT
LOC_Os08g10760
OsAffx.14773.1.S1_at--949--3592Chr08:6319807..6319831 (25 bp)
CATTCCTTCGTAATGTGGGACTTCA
LOC_Os08g10760
OsAffx.14773.1.S1_at--432--3872Chr08:6319837..6319861 (25 bp)
CTGTTGCCGCTCCAAAATCTATTTC
LOC_Os08g10760
OsAffx.14773.1.S1_at--321--192Chr08:6319857..6319881 (25 bp)
ATTTCACCGCAGATGCAGGAGCTAC
LOC_Os08g10760
OsAffx.14773.1.S1_at--951--1532Chr08:6320072..6320185 (25 bp)
AGCATTTGGACAGACTCAGGCTGTT
LOC_Os08g10760
Target Sequence 
ACAGTGCACATGTTGCTGCCGTTGCGTTGATGAGACAGTCGGAAGTGTTGCCAGCAGCGTCCACCGAGAGGATGAACTCC
TTGACGATGGAAGACGAGGCAGTGAAGTTGTGGTGGAAAAGGAGGCCCCCGGCGTCGACGTGGAAGCGGGATGCGGCGAG
GGAGGGTGCGAAGGGGATGATATGGAAGCCATTTTGAGAAGACCAGTACATGAAGGGGAGCAGGAAATGACTTGCACAGA
TATTGTTGCCCAAGTGTTGACAAAGTCAAGCACATTCCTTCGTAATGTGGGACTTCAACAGCCTGTTGCCGCTCCAAAAT
CTATTTCACCGCAGATGCAGGAGCTACAAGCACAATTGGAGGCTGAGAAGGAAGAATCTGCAGGACTTCGCCAAAAGGTC
CAGAGGTTGGAAGCCCAGGCAGAAGAATCTGAGGCAAAAGCTCAGAAACAAGCTGAGGAGATTGAGAACCTAAAGAAGGC
AATAACAGATACTCAGAAGTCAGCAGCAGATACTCAGAACCTCATTCGACAGATGATAGCATTTGGACAGACTCAGGCTG
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis