Browse Element(s) Details


Os.52707.1.S1_at

Description gb:AK068849.1
DB_XREF= gi:32978874
TID=Os.52707.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013168N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168N22, full insert sequence.
FL= gb:AK068849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1078010/11BED zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10710OsAffx.30226.4.S1_at4/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.4.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.24587.1.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_x_at2/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.19052.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_x_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_s_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10730Os.51445.1.S1_at11/118+6307531..6309280expressed protein
LOC_Os08g10740Os.52305.2.S1_x_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10740Os.52305.1.S1_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10760OsAffx.14773.1.S1_at11/118+6318967..6320497hypothetical protein
LOC_Os08g10770NANA8+6322550..6327493retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10780Os.52707.1.S1_at10/118+6327947..6333275BED zinc finger family protein, expressed
LOC_Os08g10790OsAffx.828.1.S1_x_at1/118+6348644..6349823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10800OsAffx.16940.2.S1_s_at11/118+6352433..6352978hypothetical protein
LOC_Os08g10800OsAffx.16940.1.S1_at11/118+6352433..6352978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52707.1.S1_at--725--3911NONE
CTGGCTAATGGAACTGTGGTGGCAT
NONE
Os.52707.1.S1_at--1077--691Chr08:6332937..6332961 (25 bp)
ATGAGATGGCCTTCAGCAGCTGCGA
LOC_Os08g10780
Os.52707.1.S1_at--836--1591Chr08:6332954..6332978 (25 bp)
AGCTGCGAATGCTGCTACCACTAGT
LOC_Os08g10780
Os.52707.1.S1_at--1086--9971Chr08:6332969..6332993 (25 bp)
TACCACTAGTTTTGTTCCCTGTAGT
LOC_Os08g10780
Os.52707.1.S1_at--407--6712Chr08:6333012..6333036 (25 bp)
GTTCGTTTAGATGCACTAGCCGTTG
LOC_Os08g10780
Os.52707.1.S1_at--118--4511Chr08:6333030..6333054 (25 bp)
GCCGTTGTCATTTTTGTGCATGTCC
LOC_Os08g10780
Os.52707.1.S1_at--425--7331Chr08:6333045..6333069 (25 bp)
GTGCATGTCCAGAGCCTGCTGAAAA
LOC_Os08g10780
Os.52707.1.S1_at--40--7671Chr08:6333102..6333126 (25 bp)
GGGATTTCTGGACTTTTTGTTCTGC
LOC_Os08g10780
Os.52707.1.S1_at--196--10411Chr08:6333116..6333140 (25 bp)
TTTTGTTCTGCCGTTTTGCTGCTGC
LOC_Os08g10780
Os.52707.1.S1_at--907--4771Chr08:6333178..6333202 (25 bp)
GCTGCTGGTTGAAATCCTCACTGTG
LOC_Os08g10780
Os.52707.1.S1_at--640--3171Chr08:6333246..6333270 (25 bp)
AATTGTTCAGATACAAGCCTTGCAA
LOC_Os08g10780
Target Sequence 
CTGGCTAATGGAACTGTGGTGGCATTGGTTTGCCTTCAAGATTAGATGCGAGCAGATGGTTTTGGTGATCCCTATTCAAT
TCTAACTGATACGGTTGAGGACGATGATGTTAATATGCAACTATTAGGAAGTAATGCAGGAGCGTGCTCTGGTGGTGGGG
GCAAAACTCAATGAAATTTTCCTTTCTGGAATGTTATATTCTAACTGCAAGGGATGAGATGGCCTTCAGCAGCTGCGAAT
GCTGCTACCACTAGTTTTGTTCCCTGTAGTTTTTATTTCAGTAACTTAGTTCGTTTAGATGCACTAGCCGTTGTCATTTT
TGTGCATGTCCAGAGCCTGCTGAAAATAGTATGATGTATTGGAAATTCAGTTGAGCCTGGGATTTCTGGACTTTTTGTTC
TGCCGTTTTGCTGCTGCTGCTACCGTTCTGGCCTCCTGCTGCTGGGCTAGTGCTGCTGCTGGTTGAAATCCTCACTGTGA
GAAGGACATCAATTTTTGGTTGTATTTTGCAGTGTTGATATGAATTGTTCAGATACAAGCCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis